Non-Coding RNA Search

Ss1.1-relu1314b_p7.5

Sequence:


               
               GTGCTCTGTGCTTACAGCCTGGTGGCTGTGTTCTAAAGATGAGAGCCTCAGGGCAGTTGG
AGGAATCCTGGGGTGGAGGAGGGGAGTTGGGCCTCAGGTACCTGACTTTGCTTTGTGCCC
TGTCCCTCCCACCAGCTCCCTCAACCTGACCTTTGCCACACCTCTCCAGCACACTGTCAG
TGAAGAGGCCTGGTTTGGCCCGCACACCCCTCACCCGACGTGCTGTAGATGTGGGTACAT
TTTTCCAGGATCTGCGAGATACTTCTGTGGCCTTGCCTCCTCCAGACACAGTGTTGGAGG
ACACCCAACCGTTCTCCCATCCCTTGGCTGGCCACTCCCCCAGTGTGCGCCACTCCCTGC
CTTGCCCCCCTCACTCTGGGGCTAAAGAATTGGAGAGGGCTGACAGTCGCAGGACACTGA
GCGGTGGGCCTGGGCCACAGAATAATGGTCCTGGAGAACCAGCCCAGCTTCTGGCCGGAA
AGGTGGAGGAAGCTGCTGCTGCTGCCGTGGGCTTTCCAAATGCCAGCAGTAGTATCTCTG
GAGAAGATGGAGTAGAGCCCTTACAGAACAGGGTAGGTGAGGAGGCAGAGGAAAGGACAG
AAGAAAGTTGGAGCATGAGGGAAGTGGAGGAGGCAGCAGGAGCACAAGGATCTGCCAGAG
CAGGAGAGCCTGAAGGACACACAGAGGTGACAGAAGCAGAGGGGTCCTGGGGGGCTGTTG
AGGCCAAGGAGCCAGAAGGATCTTCAGAGGATGAAGATACCTCTGGTAGGACAGGTAAGG
GGTCCAGTGCAGGGATCATGGCGTGGGTGGATAAGTGACAACTGTGTCCTACGCTTTGGT
GGTAGGGTTTACTTGGCTTGTATTTCTGGGCACAGGTAGTGTTGGGCTAGCGGAACTCTG
AAGGGCCCCCTTGCTTGGTCAGAGCTTGATGGGGCCCTTGAGGAACAGGACAAGGAGGGT
CTGGGTTGGTCAGGATGTCAGGGTTGGTTGGGATGGTCAGGCCTGAGCCTTCTGTAACCC
CGCCCTTCCTCACAGCAAGTCCAGAGTTGGCCTCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGCTCTGTGCTTACAGCCTGGTGGCTGTGTTCTAAAGATGAGAGCCTCAGGGCAGTTGG
AGGAATCCTGGGGTGGAGGAGGGGAGTTGGGCCTCAGGTACCTGACTTTGCTTTGTGCCC
TGTCCCTCCCACCAGCTCCCTCAACCTGACCTTTGCCACACCTCTCCAGCACACTGTCAG
TGAAGAGGCCTGGTTTGGCCCGCACACCCCTCACCCGACGTGCTGTAGATGTGGGTACAT
TTTTCCAGGATCTGCGAGATACTTCTGTGGCCTTGCCTCCTCCAGACACAGTGTTGGAGG
ACACCCAACCGTTCTCCCATCCCTTGGCTGGCCACTCCCCCAGTGTGCGCCACTCCCTGC
CTTGCCCCCCTCACTCTGGGGCTAAAGAATTGGAGAGGGCTGACAGTCGCAGGACACTGA
GCGGTGGGCCTGGGCCACAGAATAATGGTCCTGGAGAACCAGCCCAGCTTCTGGCCGGAA
AGGTGGAGGAAGCTGCTGCTGCTGCCGTGGGCTTTCCAAATGCCAGCAGTAGTATCTCTG
GAGAAGATGGAGTAGAGCCCTTACAGAACAGGGTAGGTGAGGAGGCAGAGGAAAGGACAG
AAGAAAGTTGGAGCATGAGGGAAGTGGAGGAGGCAGCAGGAGCACAAGGATCTGCCAGAG
CAGGAGAGCCTGAAGGACACACAGAGGTGACAGAAGCAGAGGGGTCCTGGGGGGCTGTTG
AGGCCAAGGAGCCAGAAGGATCTTCAGAGGATGAAGATACCTCTGGTAGGACAGGTAAGG
GGTCCAGTGCAGGGATCATGGCGTGGGTGGATAAGTGACAACTGTGTCCTACGCTTTGGT
GGTAGGGTTTACTTGGCTTGTATTTCTGGGCACAGGTAGTGTTGGGCTAGCGGAACTCTG
AAGGGCCCCCTTGCTTGGTCAGAGCTTGATGGGGCCCTTGAGGAACAGGACAAGGAGGGT
CTGGGTTGGTCAGGATGTCAGGGTTGGTTGGGATGGTCAGGCCTGAGCCTTCTGTAACCC
CGCCCTTCCTCACAGCAAGTCCAGAGTTGGCCTCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               77-195, - strand, RNAz p=0.582842

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               77-195, - strand, RNAz p=0.582842

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-285, gnl|bosTau2|chr18 (15014662-15014942)
               

               
               4-285, gnl|Hg17|chr16 (66422889-66422620)
               

               
               4-285, gnl|Mm7|chr8 (104447842-104447606)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-285, gnl|bosTau2|chr18 (15014662-15014942)
               

               
               4-285, gnl|Hg17|chr16 (66422889-66422620)
               

               
               4-285, gnl|Mm7|chr8 (104447842-104447606)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               elu (0.385356)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)

	4-285, gnl\|bosTau2\|chr18 (15014662-15014942)
	4-285, gnl\|Hg17\|chr16 (66422889-66422620)
	4-285, gnl\|Mm7\|chr8 (104447842-104447606)