Ss1.1-relu1319b_e15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGATCTTCAATAGCCTCCAGTGCCAACTTCATCCAACACCTGATCTGAAGCCCTTGCTC TCCAATGAGGTAATGTGGCTAGACAGCAAGCAGATCCGGCAGGAGGAGCTGAAAAAACTG GCCCTGCTCAGTGGAGGCCTCCAAGAGGAGGACCTGTCCACCTCTTTGAAGAAGAGTGTC TATATTGAAAGTCGGATGGGCACCAGCACCAGTTTTGACAGTGGCATTGCTGGGCTCTCC TCTACCAGTCAGTTTACCAGCAGTAGCCAGCTGGATGAAACAAGTCACCGATGGGCACAG CCAGACACAGCCCCTGTAAGTGTCCCTGCAGACATTCGCTTCTCCATCTGGATCTCCTTC TTTGAGATCTACAATGAACTGCTTTATGACCTGTTAGAACCACCTAGCCAGCAGCGCAAG AGGCAGACTCTGCGGCTGTGTGAGGATCAAAACGGCAATCCCTATGTGAAAGATCTCAAC TGGATTAATGTTCAGGATGCCGAGGAGGCCTGGAAACTCCTGAAAGTGGGTCGTAAAAAC CAGAGCTTTGCCAGCACCCACCTGAATCAGAACTCCAGCCGCAGTCATAGCATCTTCTCA ATCCGGATCCTGCATCTTCAGGGGGACGGGGATATAATCCCCAAGATTAGCGAGTTATCA CTCTGTGATCTGGCTGGCTCAGAGCGCTGCAAAGATCAGAAGAGTGGTGAGCGGCTGAAG GAAGCAGGAAACATTAACACGTCCCTGCACACCCTGGGCCGCTGTATTGCTGCCCTGCGC CAAAATCAGCAGAACCGATCAAAGCAGAATTGGGTTCCCTTCCGTGACAGCAAATTGACT CGAGTGTTTCAAGGCTTCTTCACAGGCCGAGGCCGCTCCTGCATGATTGTCAATGTGAAT CCCTGTGCCTCCACTTATGATGAAACCCTTCATGTGGCCAAGTTCTCAGCCATTGCTAGC CAGCTTGTGCATGCTCCACCTCTGCAGCTGGGATTCCCATCACTACATTCATTCATCAAG GAACACAGTCTGCGAGCATCTCCCAGCTTAGAAACTGGAGCTAAGACAGACCCAAGCCTT GATGATGACATTGAAACTGAAGTTGACATCTCCACCTATGGCAAGGAGGAGCTCCTACAG GTGGTGGAAGCCATGAAAGCACTGCTTTTGAAAGAACGGCAGGAAAAGTTGCAGCTGGAG ATGCACCTNCGTGATGAGATTTGC------------GAGCAGATGCAACAACGGGAACAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGATCTTCAATAGCCTCCAGTGCCAACTTCATCCAACACCTGATCTGAAGCCCTTGCTC TCCAATGAGGTAATGTGGCTAGACAGCAAGCAGATCCGGCAGGAGGAGCTGAAAAAACTG GCCCTGCTCAGTGGAGGCCTCCAAGAGGAGGACCTGTCCACCTCTTTGAAGAAGAGTGTC TATATTGAAAGTCGGATGGGCACCAGCACCAGTTTTGACAGTGGCATTGCTGGGCTCTCC TCTACCAGTCAGTTTACCAGCAGTAGCCAGCTGGATGAAACAAGTCACCGATGGGCACAG CCAGACACAGCCCCTGTAAGTGTCCCTGCAGACATTCGCTTCTCCATCTGGATCTCCTTC TTTGAGATCTACAATGAACTGCTTTATGACCTGTTAGAACCACCTAGCCAGCAGCGCAAG AGGCAGACTCTGCGGCTGTGTGAGGATCAAAACGGCAATCCCTATGTGAAAGATCTCAAC TGGATTAATGTTCAGGATGCCGAGGAGGCCTGGAAACTCCTGAAAGTGGGTCGTAAAAAC CAGAGCTTTGCCAGCACCCACCTGAATCAGAACTCCAGCCGCAGTCATAGCATCTTCTCA ATCCGGATCCTGCATCTTCAGGGGGACGGGGATATAATCCCCAAGATTAGCGAGTTATCA CTCTGTGATCTGGCTGGCTCAGAGCGCTGCAAAGATCAGAAGAGTGGTGAGCGGCTGAAG GAAGCAGGAAACATTAACACGTCCCTGCACACCCTGGGCCGCTGTATTGCTGCCCTGCGC CAAAATCAGCAGAACCGATCAAAGCAGAATTGGGTTCCCTTCCGTGACAGCAAATTGACT CGAGTGTTTCAAGGCTTCTTCACAGGCCGAGGCCGCTCCTGCATGATTGTCAATGTGAAT CCCTGTGCCTCCACTTATGATGAAACCCTTCATGTGGCCAAGTTCTCAGCCATTGCTAGC CAGCTTGTGCATGCTCCACCTCTGCAGCTGGGATTCCCATCACTACATTCATTCATCAAG GAACACAGTCTGCGAGCATCTCCCAGCTTAGAAACTGGAGCTAAGACAGACCCAAGCCTT GATGATGACATTGAAACTGAAGTTGACATCTCCACCTATGGCAAGGAGGAGCTCCTACAG GTGGTGGAAGCCATGAAAGCACTGCTTTTGAAAGAACGGCAGGAAAAGTTGCAGCTGGAG ATGCACCTNCGTGATGAGATTTGC------------GAGCAGATGCAACAACGGGAACAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 1-148, gnl|bosTau2|chr7 (34726012-34726159) | |
| 1-148, gnl|Hg17|chr5 (137546215-137546362) | |
| 1-148, gnl|Mm7|chr18 (35003291-35003438) | |
| 340-956, gnl|bosTau2|chr21 (32333105-32332483) | |
| 340-956, gnl|Hg17|chr10 (91464784-91468602) | |
| 340-956, gnl|Mm7|chr19 (34636301-34638770) | |
| 961-1129, gnl|bosTau2|chr7 (34727915-34728083) | |
| 961-1129, gnl|canFam2|chr11 (28848165-28848356) | |
| 961-1129, gnl|danRer3|chrNA (177943309-177943076) | |
| 961-1129, gnl|echTel1|scaffold_320408 (78165-77977) | |
| 961-1129, gnl|fr1|chrUn (4699382-4699196) | |
| 961-1129, gnl|galGal2|chr13 (9180938-9181124) | |
| 961-1129, gnl|hg17|chr5 (137548081-137548270) | |
| 961-1129, gnl|Hg17|chr5 (137548097-137548265) | |
| 961-1129, gnl|loxAfr1|scaffold_61318 (5904-5719) | |
| 961-1129, gnl|mm7|chr18 (35005448-35005637) | |
| 961-1129, gnl|Mm7|chr18 (35005464-35005632) | |
| 961-1129, gnl|monDom2|scaffold_6 (71319953-71319771) | |
| 961-1129, gnl|oryCun1|scaffold_170344 (3703-3891) | |
| 961-1129, gnl|panTro1|chr4 (144150531-144150720) | |
| 961-1129, gnl|rheMac2|chr6 (134590568-134590757) | |
| 961-1129, gnl|rn3|chr18 (27132143-27132333) | |
| 961-1129, gnl|xenTro1|scaffold_230 (1394417-1394234) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-148, gnl|bosTau2|chr7 (34726012-34726159) | |
| 1-148, gnl|Hg17|chr5 (137546215-137546362) | |
| 1-148, gnl|Mm7|chr18 (35003291-35003438) | |
| 340-956, gnl|bosTau2|chr21 (32333105-32332483) | |
| 340-956, gnl|Hg17|chr10 (91464784-91468602) | |
| 340-956, gnl|Mm7|chr19 (34636301-34638770) | |
| 961-1129, gnl|bosTau2|chr7 (34727915-34728083) | |
| 961-1129, gnl|canFam2|chr11 (28848165-28848356) | |
| 961-1129, gnl|danRer3|chrNA (177943309-177943076) | |
| 961-1129, gnl|echTel1|scaffold_320408 (78165-77977) | |
| 961-1129, gnl|fr1|chrUn (4699382-4699196) | |
| 961-1129, gnl|galGal2|chr13 (9180938-9181124) | |
| 961-1129, gnl|hg17|chr5 (137548081-137548270) | |
| 961-1129, gnl|Hg17|chr5 (137548097-137548265) | |
| 961-1129, gnl|loxAfr1|scaffold_61318 (5904-5719) | |
| 961-1129, gnl|mm7|chr18 (35005448-35005637) | |
| 961-1129, gnl|Mm7|chr18 (35005464-35005632) | |
| 961-1129, gnl|monDom2|scaffold_6 (71319953-71319771) | |
| 961-1129, gnl|oryCun1|scaffold_170344 (3703-3891) | |
| 961-1129, gnl|panTro1|chr4 (144150531-144150720) | |
| 961-1129, gnl|rheMac2|chr6 (134590568-134590757) | |
| 961-1129, gnl|rn3|chr18 (27132143-27132333) | |
| 961-1129, gnl|xenTro1|scaffold_230 (1394417-1394234) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| ese (0.126502) | |
| eep (0.122564) |