Non-Coding RNA Search

Ss1.1-relu1319b_j12.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGAAAGTGTATTTGAAAATAAAGTCAGATGG
AAAATTCAATTTTTAAATTCCCATTTTGTCAGTTTCTCTGATAAAAGATGGCCATATTAC
CCCTCTTAGGCCCCACATATTCCAGTACTCCTTCCCTAGAGCTGGGCTAAGTAAATAAGA
ATTTGGTTTTATGCCTGAGGCACTTAGACACTTCACAAGGTGGCATAATCTGTCTCACCT
GGACTGCAGGGTCTGGCTCTAGTTCACAGTGCTTTTCTTACTGTATCCAGGTTCCCTCCC
AGAGGAGCCACCAGTTCTCTTGTGTGGCACTTGGTTTCTCTCTTATCTCCAGCTGACTAA
ACTTTTTCTGTACCAGTTAATTTTTCCAACTACTAATAGAATAAAGGCAGTTTTCTAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGAAAGTGTATTTGAAAATAAAGTCAGATGG
AAAATTCAATTTTTAAATTCCCATTTTGTCAGTTTCTCTGATAAAAGATGGCCATATTAC
CCCTCTTAGGCCCCACATATTCCAGTACTCCTTCCCTAGAGCTGGGCTAAGTAAATAAGA
ATTTGGTTTTATGCCTGAGGCACTTAGACACTTCACAAGGTGGCATAATCTGTCTCACCT
GGACTGCAGGGTCTGGCTCTAGTTCACAGTGCTTTTCTTACTGTATCCAGGTTCCCTCCC
AGAGGAGCCACCAGTTCTCTTGTGTGGCACTTGGTTTCTCTCTTATCTCCAGCTGACTAA
ACTTTTTCTGTACCAGTTAATTTTTCCAACTACTAATAGAATAAAGGCAGTTTTCTAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               205-317, - strand, RNAz p=0.936699

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               205-317, - strand, RNAz p=0.936699

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               11-419, gnl|bosTau2|chr22 (37802187-37801771)
               

               
               11-419, gnl|Hg17|chr3 (49371982-49371582)
               

               
               11-419, gnl|Mm7|chr9 (108070851-108071268)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-419, gnl|bosTau2|chr22 (37802187-37801771)
               

               
               11-419, gnl|Hg17|chr3 (49371982-49371582)
               

               
               11-419, gnl|Mm7|chr9 (108070851-108071268)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               amn (0.417711)
               

               
               elu (0.385356)
               

               
               jca (0.22792)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               elu (0.385356)
               

               
               jca (0.22792)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	11-419, gnl\|bosTau2\|chr22 (37802187-37801771)
	11-419, gnl\|Hg17\|chr3 (49371982-49371582)
	11-419, gnl\|Mm7\|chr9 (108070851-108071268)

	amn (0.417711)
	elu (0.385356)
	jca (0.22792)
	eje (0.197668)
	col (0.195008)
	fty (0.17584)
	duo (0.172801)
	eye (0.170503)
	csp (0.161186)
	hyp (0.142837)
	pty (0.142714)
	csk (0.140746)
	cov (0.132153)
	ova (0.129132)
	ese (0.126502)
	cly (0.120642)
	ecc (0.115035)
	spc (0.113366)