Ss1.1-relu1320b_k1.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCATGATCCGGCTGCGCGGCTGGTGCGCGAGGAGGCCCCGCGGCGCGACCCGGCCCGC GGGGCCTGCGGGGAGGCGCTGGGCGTCGGGCGGGCCTGGGGGCCGCGCTCTCCGGGTGCT GGTAGACATGGACGGCGTGCTGGCCGACTTCGAGGGCGGCTTCCTCAGGAAGTTCCGAGC GCGCTTCCCCGACCAGCCCTTCATCGCGCTGGAGGACCGGCGCGGCTTCTGGGTGTCGGA GCAGTACTGCCGCCTGCAGCCCGGGCTGAGCGAGAAGGCCATCAGCATATGGGAGTCGGA GAATTTCTTCTTTGACCTCGAGCCTCTCCCCGGGGCTGTGGAAGCTGTGAAGCAGATGGC CAACCTGGAGAGCACCGAGGTCTTTATCTGCACGAGCCCCATCAAGATGTACAAGTACTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCATGATCCGGCTGCGCGGCTGGTGCGCGAGGAGGCCCCGCGGCGCGACCCGGCCCGC GGGGCCTGCGGGGAGGCGCTGGGCGTCGGGCGGGCCTGGGGGCCGCGCTCTCCGGGTGCT GGTAGACATGGACGGCGTGCTGGCCGACTTCGAGGGCGGCTTCCTCAGGAAGTTCCGAGC GCGCTTCCCCGACCAGCCCTTCATCGCGCTGGAGGACCGGCGCGGCTTCTGGGTGTCGGA GCAGTACTGCCGCCTGCAGCCCGGGCTGAGCGAGAAGGCCATCAGCATATGGGAGTCGGA GAATTTCTTCTTTGACCTCGAGCCTCTCCCCGGGGCTGTGGAAGCTGTGAAGCAGATGGC CAACCTGGAGAGCACCGAGGTCTTTATCTGCACGAGCCCCATCAAGATGTACAAGTACTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 272-372, + strand, RNAz p=0.64019 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 272-372, + strand, RNAz p=0.64019 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 55-268, gnl|bosTau2|chr19 (50890186-50890404) | |
| 55-268, gnl|canFam2|chr2 (4364227-4364049) | |
| 55-268, gnl|hg17|chr14 (73107982-73108157) | |
| 55-268, gnl|Hg17|chr17 (70639436-70639227) | |
| 55-268, gnl|loxAfr1|scaffold_28164 (17673-17851) | |
| 55-268, gnl|mm7|chr11 (115600652-115600829) | |
| 55-268, gnl|Mm7|chr11 (115600845-115600655) | |
| 55-268, gnl|panTro1|chr15 (72872063-72872238) | |
| 55-268, gnl|rheMac2|chr7 (136677768-136677943) | |
| 55-268, gnl|rn3|chr10 (105591173-105591350) | |
| 272-372, gnl|bosTau2|chr19 (26489422-26489322) | |
| 272-372, gnl|canFam2|chr5 (45114710-45114596) | |
| 272-372, gnl|danRer3|chrNA (186240757-186240868) | |
| 272-372, gnl|dasNov1|scaffold_205067 (3411-3312) | |
| 272-372, gnl|echTel1|scaffold_166932 (1296-1182) | |
| 272-372, gnl|fr1|chrUn (220420099-220419987) | |
| 272-372, gnl|galGal2|chr14 (6863853-6863965) | |
| 272-372, gnl|hg17|chr17 (17150577-17150691) | |
| 272-372, gnl|Hg17|chr17 (17150582-17150682) | |
| 272-372, gnl|loxAfr1|scaffold_131785 (468-582) | |
| 272-372, gnl|mm7|chr11 (59934331-59934445) | |
| 272-372, gnl|Mm7|chr11 (59934336-59934436) | |
| 272-372, gnl|monDom2|scaffold_193 (257329-257443) | |
| 272-372, gnl|panTro1|chr19 (17550835-17550949) | |
| 272-372, gnl|rheMac2|chr16 (70419213-70419102) | |
| 272-372, gnl|rn3|chr10 (46191916-46192030) | |
| 272-372, gnl|tetNig1|chrUn_random (4487306-4487416) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 55-268, gnl|bosTau2|chr19 (50890186-50890404) | |
| 55-268, gnl|canFam2|chr2 (4364227-4364049) | |
| 55-268, gnl|hg17|chr14 (73107982-73108157) | |
| 55-268, gnl|Hg17|chr17 (70639436-70639227) | |
| 55-268, gnl|loxAfr1|scaffold_28164 (17673-17851) | |
| 55-268, gnl|mm7|chr11 (115600652-115600829) | |
| 55-268, gnl|Mm7|chr11 (115600845-115600655) | |
| 55-268, gnl|panTro1|chr15 (72872063-72872238) | |
| 55-268, gnl|rheMac2|chr7 (136677768-136677943) | |
| 55-268, gnl|rn3|chr10 (105591173-105591350) | |
| 272-372, gnl|bosTau2|chr19 (26489422-26489322) | |
| 272-372, gnl|canFam2|chr5 (45114710-45114596) | |
| 272-372, gnl|danRer3|chrNA (186240757-186240868) | |
| 272-372, gnl|dasNov1|scaffold_205067 (3411-3312) | |
| 272-372, gnl|echTel1|scaffold_166932 (1296-1182) | |
| 272-372, gnl|fr1|chrUn (220420099-220419987) | |
| 272-372, gnl|galGal2|chr14 (6863853-6863965) | |
| 272-372, gnl|hg17|chr17 (17150577-17150691) | |
| 272-372, gnl|Hg17|chr17 (17150582-17150682) | |
| 272-372, gnl|loxAfr1|scaffold_131785 (468-582) | |
| 272-372, gnl|mm7|chr11 (59934331-59934445) | |
| 272-372, gnl|Mm7|chr11 (59934336-59934436) | |
| 272-372, gnl|monDom2|scaffold_193 (257329-257443) | |
| 272-372, gnl|panTro1|chr19 (17550835-17550949) | |
| 272-372, gnl|rheMac2|chr16 (70419213-70419102) | |
| 272-372, gnl|rn3|chr10 (46191916-46192030) | |
| 272-372, gnl|tetNig1|chrUn_random (4487306-4487416) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| nca (0.136874) |