Ss1.1-relu1322c_o1.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGGTCCCAGAGCCCCAGGAGTGGGGAGCGGGAGGCCCGGGGAACGCTGGCCTGCACGTA CTTTGAGGCTCTTGGGCTGCTGGCGAACCTGGGCTGCATGCTTCTGCCGCAACTCTTGCT CACGCCGCTTGTTGTACTCCAGCTGGTTGCCCAGCTCCGTCTGGTGCTGTAGGCGGGTGA GCTCAGCCCGTGTGCGCTGTACGGCCTGGAGCTGCCGTAGCTCCAGCTCCCGTGTGGCCT CATGCTGCCGTAGCAGCAGTGCACACTCCAAGTCCTTCTGTGTCTGTTTCTTGTTCAAGT CCTCTCGCAGCAGGTCCTGGTCCAGGCTGTGACGAGCCAGTAGCATCTTGCGCTTGTACT GGCGACACTGCAGCTCAAAGTACTGGCGCTGCCGCCGCAGCAGCCCAGCCTCCTCCTCTG CCTGGCACTGCTGCAGCTGCTCCTTCTGCCGCAAAAGCCACTCGGCCTTCTCCCGCTTGG GGGTGCTGGGGTTCTCCTGGAGCTCCTCCTTCAGCTGCTCCTTCCGAAGTTTATAGGTTC GCTTCTGTGCCTCCAGCAGGGCAGCCAGCTCCTTCTTCTGCTGCCCGAGGATGTGCTGCT GGAACTTACGCTCCTCAGCCTGGGCAGCTCTTGCCTCCTTCTCACCGATAGCCTGGTGCC GCCGTGACAGCTTTTCTGCCTCAGCCCCCAAGCCAGCCCGCTGTGCCTCGAGCTCCCGCT GCAGCCGTGCGCTATGTTCCTCACGTTCACCCCTCAGCCTTGACTCCCACGCTAACAGCT GCTTCTGGTGCTGGCGTCGCATCCGCTTATAACCACTCAGCTGCTCCCGCAGGGCTGAGT CCTGCTCATGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGGTCCCAGAGCCCCAGGAGTGGGGAGCGGGAGGCCCGGGGAACGCTGGCCTGCACGTA CTTTGAGGCTCTTGGGCTGCTGGCGAACCTGGGCTGCATGCTTCTGCCGCAACTCTTGCT CACGCCGCTTGTTGTACTCCAGCTGGTTGCCCAGCTCCGTCTGGTGCTGTAGGCGGGTGA GCTCAGCCCGTGTGCGCTGTACGGCCTGGAGCTGCCGTAGCTCCAGCTCCCGTGTGGCCT CATGCTGCCGTAGCAGCAGTGCACACTCCAAGTCCTTCTGTGTCTGTTTCTTGTTCAAGT CCTCTCGCAGCAGGTCCTGGTCCAGGCTGTGACGAGCCAGTAGCATCTTGCGCTTGTACT GGCGACACTGCAGCTCAAAGTACTGGCGCTGCCGCCGCAGCAGCCCAGCCTCCTCCTCTG CCTGGCACTGCTGCAGCTGCTCCTTCTGCCGCAAAAGCCACTCGGCCTTCTCCCGCTTGG GGGTGCTGGGGTTCTCCTGGAGCTCCTCCTTCAGCTGCTCCTTCCGAAGTTTATAGGTTC GCTTCTGTGCCTCCAGCAGGGCAGCCAGCTCCTTCTTCTGCTGCCCGAGGATGTGCTGCT GGAACTTACGCTCCTCAGCCTGGGCAGCTCTTGCCTCCTTCTCACCGATAGCCTGGTGCC GCCGTGACAGCTTTTCTGCCTCAGCCCCCAAGCCAGCCCGCTGTGCCTCGAGCTCCCGCT GCAGCCGTGCGCTATGTTCCTCACGTTCACCCCTCAGCCTTGACTCCCACGCTAACAGCT GCTTCTGGTGCTGGCGTCGCATCCGCTTATAACCACTCAGCTGCTCCCGCAGGGCTGAGT CCTGCTCATGCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 80-314, - strand, RNAz p=0.951907 | |
| 505-623, - strand, RNAz p=0.806355 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 80-314, - strand, RNAz p=0.951907 | |
| 505-623, - strand, RNAz p=0.806355 |
| Homologous human UTR: 2 entry(ies) | More info |
| Homologous human UTR: 2 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AL137701, - | |
| 5' of AL137701, - |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-314, gnl|bosTau2|chr25 (25337047-25336734) | |
| 1-314, gnl|Hg17|chr16 (29905387-29905074) | |
| 1-314, gnl|Mm7|chr7 (122967905-122968212) | |
| 60-303, gnl|bosTau2|chr17 (32101433-32101190) | |
| 60-303, gnl|canFam2|chr26 (17569066-17569312) | |
| 60-303, gnl|danRer3|chrUn (94610019-94609773) | |
| 60-303, gnl|dasNov1|scaffold_2725 (137666-137420) | |
| 60-303, gnl|echTel1|scaffold_286060 (11376-11622) | |
| 60-303, gnl|fr1|chrUn (222783807-222784053) | |
| 60-303, gnl|galGal2|chr15 (9810662-9810419) | |
| 60-303, gnl|hg17|chr12 (117062309-117062555) | |
| 60-303, gnl|Hg17|chr12 (117062311-117062554) | |
| 60-303, gnl|loxAfr1|scaffold_27422 (19087-19333) | |
| 60-303, gnl|mm7|chr5 (116493509-116493263) | |
| 60-303, gnl|Mm7|chr5 (116493505-116493262) | |
| 60-303, gnl|monDom2|scaffold_101 (2550062-2549818) | |
| 60-303, gnl|oryCun1|scaffold_130870 (5333-5579) | |
| 60-303, gnl|panTro1|chr10 (120051246-120051492) | |
| 60-303, gnl|rheMac2|chr11 (119119990-119120236) | |
| 60-303, gnl|rn3|chr12 (40376876-40377122) | |
| 60-303, gnl|tetNig1|chr12 (4435318-4435072) | |
| 60-303, gnl|xenTro1|scaffold_2 (610939-611185) | |
| 505-852, gnl|bosTau2|chr25 (25336135-25335788) | |
| 505-852, gnl|canFam2|chr6 (21035089-21035347) | |
| 505-852, gnl|danRer3|chr15 (32367945-32368265) | |
| 505-852, gnl|dasNov1|scaffold_161622 (4843-4585) | |
| 505-852, gnl|echTel1|scaffold_239196 (2666-2411) | |
| 505-852, gnl|fr1|chrUn (131617063-131616744) | |
| 505-852, gnl|galGal2|chr19 (5642561-5642813) | |
| 505-852, gnl|hg17|chr16 (29904029-29904287) | |
| 505-852, gnl|Hg17|chr16 (29904401-29904054) | |
| 505-852, gnl|loxAfr1|scaffold_34517 (3479-3216) | |
| 505-852, gnl|mm7|chr7 (122969128-122968870) | |
| 505-852, gnl|Mm7|chr7 (122968754-122969101) | |
| 505-852, gnl|monDom2|scaffold_5 (119766693-119766435) | |
| 505-852, gnl|oryCun1|scaffold_171640 (16921-17179) | |
| 505-852, gnl|panTro1|chr18 (30666074-30666332) | |
| 505-852, gnl|rheMac2|chr20 (27952646-27952904) | |
| 505-852, gnl|rn3|chr1 (186201937-186201679) | |
| 505-852, gnl|tetNig1|chr3 (13902293-13901970) | |
| 505-852, gnl|xenTro1|scaffold_805 (120254-120500) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-314, gnl|bosTau2|chr25 (25337047-25336734) | |
| 1-314, gnl|Hg17|chr16 (29905387-29905074) | |
| 1-314, gnl|Mm7|chr7 (122967905-122968212) | |
| 60-303, gnl|bosTau2|chr17 (32101433-32101190) | |
| 60-303, gnl|canFam2|chr26 (17569066-17569312) | |
| 60-303, gnl|danRer3|chrUn (94610019-94609773) | |
| 60-303, gnl|dasNov1|scaffold_2725 (137666-137420) | |
| 60-303, gnl|echTel1|scaffold_286060 (11376-11622) | |
| 60-303, gnl|fr1|chrUn (222783807-222784053) | |
| 60-303, gnl|galGal2|chr15 (9810662-9810419) | |
| 60-303, gnl|hg17|chr12 (117062309-117062555) | |
| 60-303, gnl|Hg17|chr12 (117062311-117062554) | |
| 60-303, gnl|loxAfr1|scaffold_27422 (19087-19333) | |
| 60-303, gnl|mm7|chr5 (116493509-116493263) | |
| 60-303, gnl|Mm7|chr5 (116493505-116493262) | |
| 60-303, gnl|monDom2|scaffold_101 (2550062-2549818) | |
| 60-303, gnl|oryCun1|scaffold_130870 (5333-5579) | |
| 60-303, gnl|panTro1|chr10 (120051246-120051492) | |
| 60-303, gnl|rheMac2|chr11 (119119990-119120236) | |
| 60-303, gnl|rn3|chr12 (40376876-40377122) | |
| 60-303, gnl|tetNig1|chr12 (4435318-4435072) | |
| 60-303, gnl|xenTro1|scaffold_2 (610939-611185) | |
| 505-852, gnl|bosTau2|chr25 (25336135-25335788) | |
| 505-852, gnl|canFam2|chr6 (21035089-21035347) | |
| 505-852, gnl|danRer3|chr15 (32367945-32368265) | |
| 505-852, gnl|dasNov1|scaffold_161622 (4843-4585) | |
| 505-852, gnl|echTel1|scaffold_239196 (2666-2411) | |
| 505-852, gnl|fr1|chrUn (131617063-131616744) | |
| 505-852, gnl|galGal2|chr19 (5642561-5642813) | |
| 505-852, gnl|hg17|chr16 (29904029-29904287) | |
| 505-852, gnl|Hg17|chr16 (29904401-29904054) | |
| 505-852, gnl|loxAfr1|scaffold_34517 (3479-3216) | |
| 505-852, gnl|mm7|chr7 (122969128-122968870) | |
| 505-852, gnl|Mm7|chr7 (122968754-122969101) | |
| 505-852, gnl|monDom2|scaffold_5 (119766693-119766435) | |
| 505-852, gnl|oryCun1|scaffold_171640 (16921-17179) | |
| 505-852, gnl|panTro1|chr18 (30666074-30666332) | |
| 505-852, gnl|rheMac2|chr20 (27952646-27952904) | |
| 505-852, gnl|rn3|chr1 (186201937-186201679) | |
| 505-852, gnl|tetNig1|chr3 (13902293-13901970) | |
| 505-852, gnl|xenTro1|scaffold_805 (120254-120500) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| med (0.116252) |