Non-Coding RNA Search

Ss1.1-relu1325c_m6.5

Sequence:


               
               AATAGGTCCTCTACCTGTGTGTGAAATAACTGAATTAATGAAAGCATTAAAATGAGGGTG
AGTAGAGGAATAATTTTCAGTGTGGTACCAGACAGGTACTACAGGTAGAATACCAATCAA
AGCTAAATTTTGAACTAAAAGAGTGAAATTGTTGGAAAATTGAGGAAAACTCAATAGTTA
CTATATTATTTATTGAGTACTTATTACACCCTTGGCACTGTTCTGAGCATTTAAAATGTA
CTATTTTATAATCCTTACAATTACCCTATGAACTAGGGGTTGAGTCGGAGCTGCAGCTGC
TGGCCTACACCGCAACCACAGCAATGCCAGATCCGAGTGGCGTCTGAGACCTACACCACA
GTTCACGGCAGCGCCAGATCCTTAACCCACTGAGTGAGACCTGCATCCTCATGGATACAA
GATGGGTTCATAACCTGCTGAGCCACAATGGGAACTCCCATAGCATGACTTATAAGTGAT
TCGAAAAACACATTCTAGTGCTCCTGGAACCAGTTATTTCCGTGTTCAAACCACGGCTTA
CTCACTAATTAGCTGTCTGATCTTTGCAAGTTCCTTAGTCTCTCTGAACCTGAACCTGCC
TAAGTTTAGATTTCAGCTCTGCCACTTATCTTGTGTAACTTTGGGCAACGCATTTGATCT
GTACCTCACGTTCCTCATCTGCAAAATGGGGATAACAGTTTCTACTCTAACAGAGTTTTG
AGCAGTAAATAAACGAATCCACGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATAGGTCCTCTACCTGTGTGTGAAATAACTGAATTAATGAAAGCATTAAAATGAGGGTG
AGTAGAGGAATAATTTTCAGTGTGGTACCAGACAGGTACTACAGGTAGAATACCAATCAA
AGCTAAATTTTGAACTAAAAGAGTGAAATTGTTGGAAAATTGAGGAAAACTCAATAGTTA
CTATATTATTTATTGAGTACTTATTACACCCTTGGCACTGTTCTGAGCATTTAAAATGTA
CTATTTTATAATCCTTACAATTACCCTATGAACTAGGGGTTGAGTCGGAGCTGCAGCTGC
TGGCCTACACCGCAACCACAGCAATGCCAGATCCGAGTGGCGTCTGAGACCTACACCACA
GTTCACGGCAGCGCCAGATCCTTAACCCACTGAGTGAGACCTGCATCCTCATGGATACAA
GATGGGTTCATAACCTGCTGAGCCACAATGGGAACTCCCATAGCATGACTTATAAGTGAT
TCGAAAAACACATTCTAGTGCTCCTGGAACCAGTTATTTCCGTGTTCAAACCACGGCTTA
CTCACTAATTAGCTGTCTGATCTTTGCAAGTTCCTTAGTCTCTCTGAACCTGAACCTGCC
TAAGTTTAGATTTCAGCTCTGCCACTTATCTTGTGTAACTTTGGGCAACGCATTTGATCT
GTACCTCACGTTCCTCATCTGCAAAATGGGGATAACAGTTTCTACTCTAACAGAGTTTTG
AGCAGTAAATAAACGAATCCACGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2-191, + strand, RNAz p=0.819178

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-191, + strand, RNAz p=0.819178

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               2-277, gnl|bosTau2|chr3 (8112416-8112136)
               

               
               2-277, gnl|Hg17|chr1 (150711671-150711386)
               


               
               456-732, gnl|bosTau2|chr3 (8111881-8111591)
               

               
               456-732, gnl|dasNov1|scaffold_5017 (52156-52455)
               

               
               456-732, gnl|echTel1|scaffold_286841 (44569-44908)
               

               
               456-732, gnl|hg17|chr1 (150709390-150709737)
               

               
               456-732, gnl|Hg17|chr1 (150710052-150709488)
               

               
               456-732, gnl|Mm7|chr3 (90422726-90422971)
               

               
               456-732, gnl|oryCun1|scaffold_69758 (897-1234)
               

               
               456-732, gnl|panTro1|chr1 (132690284-132690631)
               

               
               456-732, gnl|rheMac2|chr1 (132439818-132440174)
               

               
               456-732, gnl|rn3|chr2 (182484711-182484426)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-277, gnl|bosTau2|chr3 (8112416-8112136)
               

               
               2-277, gnl|Hg17|chr1 (150711671-150711386)
               


               
               456-732, gnl|bosTau2|chr3 (8111881-8111591)
               

               
               456-732, gnl|dasNov1|scaffold_5017 (52156-52455)
               

               
               456-732, gnl|echTel1|scaffold_286841 (44569-44908)
               

               
               456-732, gnl|hg17|chr1 (150709390-150709737)
               

               
               456-732, gnl|Hg17|chr1 (150710052-150709488)
               

               
               456-732, gnl|Mm7|chr3 (90422726-90422971)
               

               
               456-732, gnl|oryCun1|scaffold_69758 (897-1234)
               

               
               456-732, gnl|panTro1|chr1 (132690284-132690631)
               

               
               456-732, gnl|rheMac2|chr1 (132439818-132440174)
               

               
               456-732, gnl|rn3|chr2 (182484711-182484426)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               elu (0.385356)
               

               
               liv (0.146284)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               liv (0.146284)

	2-277, gnl\|bosTau2\|chr3 (8112416-8112136)
	2-277, gnl\|Hg17\|chr1 (150711671-150711386)

	456-732, gnl\|bosTau2\|chr3 (8111881-8111591)
	456-732, gnl\|dasNov1\|scaffold_5017 (52156-52455)
	456-732, gnl\|echTel1\|scaffold_286841 (44569-44908)
	456-732, gnl\|hg17\|chr1 (150709390-150709737)
	456-732, gnl\|Hg17\|chr1 (150710052-150709488)
	456-732, gnl\|Mm7\|chr3 (90422726-90422971)
	456-732, gnl\|oryCun1\|scaffold_69758 (897-1234)
	456-732, gnl\|panTro1\|chr1 (132690284-132690631)
	456-732, gnl\|rheMac2\|chr1 (132439818-132440174)
	456-732, gnl\|rn3\|chr2 (182484711-182484426)