Ss1.1-relu1326c_c12.5
|
GGCGCTCCAGATGGCTCCCCCCAGAGAAGCAAGGCCGTGCCCCATAGCTCTGAATCTGGC
AGGTGTGCCTGGCAGTAGGAGGGCTCTGTCACAGGATCCTGGGCTGTTACCCTTCCAGAC
CCTGTCCTAGTTCCTTCTGTCTTCAAGGGGGAGTCCCTTCCCTCCAGTCTCTAGATAACC
TGAGGGTCAGCACTCCATTTTCACTGTGAAGCCCAAGTCTTCCTGCCTCGCATTCGCCTG
AACCACCCCCCCGCCTCCCTGGCTAATGAATCAGGAAGTCAAGACAGAGCCCTCCTGCCT
GAGCTCTGGCTCGGGGTTGGGGGGGCCGGAGGCAGTGGGTCACCCCTTTAAAGCCTCATT
TCCAGTTAAACTTCCAGATGCCTTTATATCTGACATCACGGAGCCAGTAACGTGCTGTTA
AAGTAAAAGGGCCTCTCATTCCGTACAGCGCCCGGTGTGCTGAAAGAGGCTGAAGCCTGG
CTGCCTTTCCTGTGTCAGAGGCCCCCCCAAATCTGATTTGGCCTCATCGACAGGGAGCAG
TGCTGATGCTGTGAAGGTTTTTGAAAAAAGAAGGTCCCAGGATAACCTGCTCTTTACACA
ATGCCTTACCCATGGGGATTGCTGGTGTCAGGGCCCCAACTCCCTCTACACAGCAGCCCG
GCCTCACAGCTGGAGACCCCGAAACCTACAGGACAAAGAGCGCTCCCCCTCGGCCTTCGC
CAGGGACTCGTGGAAACGGAGGCTCCCAGGAAAAGTGACTTGTGTGTGGAGTATGATGAT
GACAATAAGGCTTAGCACTGAACTCAGTTTGTCCTTAGGTCCATCCGTCCCTTGTTGTCC
TGTGAAAAGGTTTTATACATTATGCATTATTCAGCCCACCTTACTTACATGGTGTCGCCC
TGACCTTCAGTGGGCAAATCTGTGCTCACTGCTGTCTTTGCAACAAACCAGGTGTCCTTT
GTGTGGGAAGTGGCTGCAGACTTCATGGTAAACTATGTTTTCAATATTTAGTTTTTCACA
AGAACTTGACCGTTGTATTGCTCTCATTTACTAGCAGTTAAACAGCATAGACTAAACACC
TCTCTGTGTGTTTTTTTTTCCCCCTTCTGTACGGTTGTGGCTTTTAGAACACGCGGTGTC
AGGAGAAACTTGATGTCAAGGTCAATATGAATTCTTCTCTGTCGTGTTTCATTTCTCCTA
AGTCTGCTGTATATTACCTGAGCGGAAATGTTGTGTATTCCAGTCCATTTGCATATTTGA
AGCCGTTTCCAACTCTGACTCTGATCGTCTCTTCTGATTCACACATAGACAGTTCCGAGC
ATGTTTCTTCCACTGCTTCGTGATGGAACCATCACAGCAACTAATCAGACTTCCCGCCAG
TGTCCTAGTTCCCAGGTCCCCCTTGTTAAACGATATTTAAAGATTGGAATTTGTATAAAG
TAGCTTCCAAGTTTTATAATGCATCATTTTACATCTTTCATAATTAAAAGCAGCACAATA
AGCTTGAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGCGCTCCAGATGGCTCCCCCCAGAGAAGCAAGGCCGTGCCCCATAGCTCTGAATCTGGC
AGGTGTGCCTGGCAGTAGGAGGGCTCTGTCACAGGATCCTGGGCTGTTACCCTTCCAGAC
CCTGTCCTAGTTCCTTCTGTCTTCAAGGGGGAGTCCCTTCCCTCCAGTCTCTAGATAACC
TGAGGGTCAGCACTCCATTTTCACTGTGAAGCCCAAGTCTTCCTGCCTCGCATTCGCCTG
AACCACCCCCCCGCCTCCCTGGCTAATGAATCAGGAAGTCAAGACAGAGCCCTCCTGCCT
GAGCTCTGGCTCGGGGTTGGGGGGGCCGGAGGCAGTGGGTCACCCCTTTAAAGCCTCATT
TCCAGTTAAACTTCCAGATGCCTTTATATCTGACATCACGGAGCCAGTAACGTGCTGTTA
AAGTAAAAGGGCCTCTCATTCCGTACAGCGCCCGGTGTGCTGAAAGAGGCTGAAGCCTGG
CTGCCTTTCCTGTGTCAGAGGCCCCCCCAAATCTGATTTGGCCTCATCGACAGGGAGCAG
TGCTGATGCTGTGAAGGTTTTTGAAAAAAGAAGGTCCCAGGATAACCTGCTCTTTACACA
ATGCCTTACCCATGGGGATTGCTGGTGTCAGGGCCCCAACTCCCTCTACACAGCAGCCCG
GCCTCACAGCTGGAGACCCCGAAACCTACAGGACAAAGAGCGCTCCCCCTCGGCCTTCGC
CAGGGACTCGTGGAAACGGAGGCTCCCAGGAAAAGTGACTTGTGTGTGGAGTATGATGAT
GACAATAAGGCTTAGCACTGAACTCAGTTTGTCCTTAGGTCCATCCGTCCCTTGTTGTCC
TGTGAAAAGGTTTTATACATTATGCATTATTCAGCCCACCTTACTTACATGGTGTCGCCC
TGACCTTCAGTGGGCAAATCTGTGCTCACTGCTGTCTTTGCAACAAACCAGGTGTCCTTT
GTGTGGGAAGTGGCTGCAGACTTCATGGTAAACTATGTTTTCAATATTTAGTTTTTCACA
AGAACTTGACCGTTGTATTGCTCTCATTTACTAGCAGTTAAACAGCATAGACTAAACACC
TCTCTGTGTGTTTTTTTTTCCCCCTTCTGTACGGTTGTGGCTTTTAGAACACGCGGTGTC
AGGAGAAACTTGATGTCAAGGTCAATATGAATTCTTCTCTGTCGTGTTTCATTTCTCCTA
AGTCTGCTGTATATTACCTGAGCGGAAATGTTGTGTATTCCAGTCCATTTGCATATTTGA
AGCCGTTTCCAACTCTGACTCTGATCGTCTCTTCTGATTCACACATAGACAGTTCCGAGC
ATGTTTCTTCCACTGCTTCGTGATGGAACCATCACAGCAACTAATCAGACTTCCCGCCAG
TGTCCTAGTTCCCAGGTCCCCCTTGTTAAACGATATTTAAAGATTGGAATTTGTATAAAG
TAGCTTCCAAGTTTTATAATGCATCATTTTACATCTTTCATAATTAAAAGCAGCACAATA
AGCTTGAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1161-1276, + strand, RNAmicro p=0.947377 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
1161-1276, + strand, RNAmicro p=0.947377 |
|
3-379, gnl|bosTau2|chr21 (12386361-12386002) |
|
3-379, gnl|Hg17|chr15 (88988085-88988429) |
| |
|
405-562, gnl|bosTau2|chr21 (12385999-12385841) |
|
405-562, gnl|canFam2|chr3 (56423359-56423100) |
|
405-562, gnl|dasNov1|scaffold_88913 (4912-5223) |
|
405-562, gnl|hg17|chr15 (88988436-88988708) |
|
405-562, gnl|Hg17|chr15 (88988455-88988590) |
|
405-562, gnl|mm7|chr7 (76459166-76458860) |
|
405-562, gnl|oryCun1|scaffold_150942 (11352-11624) |
|
405-562, gnl|panTro1|chr16_random (29062655-29062383) |
|
405-562, gnl|rheMac2|chr7 (70357860-70358131) |
|
405-562, gnl|rn3|chr1 (136840602-136840281) |
| |
|
567-1506, gnl|bosTau2|chr21 (12385818-12384879) |
|
567-1506, gnl|Hg17|chr15 (88988606-88989573) |
|
567-1506, gnl|Mm7|chr7 (76459020-76458077) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
3-379, gnl|bosTau2|chr21 (12386361-12386002) |
|
3-379, gnl|Hg17|chr15 (88988085-88988429) |
| |
|
405-562, gnl|bosTau2|chr21 (12385999-12385841) |
|
405-562, gnl|canFam2|chr3 (56423359-56423100) |
|
405-562, gnl|dasNov1|scaffold_88913 (4912-5223) |
|
405-562, gnl|hg17|chr15 (88988436-88988708) |
|
405-562, gnl|Hg17|chr15 (88988455-88988590) |
|
405-562, gnl|mm7|chr7 (76459166-76458860) |
|
405-562, gnl|oryCun1|scaffold_150942 (11352-11624) |
|
405-562, gnl|panTro1|chr16_random (29062655-29062383) |
|
405-562, gnl|rheMac2|chr7 (70357860-70358131) |
|
405-562, gnl|rn3|chr1 (136840602-136840281) |
| |
|
567-1506, gnl|bosTau2|chr21 (12385818-12384879) |
|
567-1506, gnl|Hg17|chr15 (88988606-88989573) |
|
567-1506, gnl|Mm7|chr7 (76459020-76458077) |
|
aor (0.390549) |
|
elu (0.385356) |
|
sag (0.36543) |
|
spl (0.286369) |
|
cbe (0.239234) |
|
fcc (0.197785) |
|
csp (0.161186) |
|
cag (0.151194) |
|
fat (0.147427) |
|
lin (0.145603) |
|
hlv (0.139256) |
|
pla (0.133672) |
|
lyg (0.133103) |
|
ova (0.129132) |
|
ret (0.128733) |
|
thg (0.126791) |
|
bla (0.124347) |
|
cly (0.120642) |
|
med (0.116252) |
|
jca (0.11396) |
|
spc (0.113366) |
|
aor (0.390549) |
|
elu (0.385356) |
|
sag (0.36543) |
|
spl (0.286369) |
|
cbe (0.239234) |
|
fcc (0.197785) |
|
csp (0.161186) |
|
cag (0.151194) |
|
fat (0.147427) |
|
lin (0.145603) |
|
hlv (0.139256) |
|
pla (0.133672) |
|
lyg (0.133103) |
|
ova (0.129132) |
|
ret (0.128733) |
|
thg (0.126791) |
|
bla (0.124347) |
|
cly (0.120642) |
|
med (0.116252) |
|
jca (0.11396) |
|
spc (0.113366) |
