Non-Coding RNA Search

Ss1.1-relu1329c_j8.5

Sequence:


               
               CAACTACAGCAGAGAAGCCTCCCTGCCTCAGACCCGAAGTCTCCCGTTCCGCCCTGTGTG
TGTGTGTGCGCACATGTGCGAGTGTGTGAAACTCGGGGTGTGACTGAGTGCATCGGAGCC
CCACGTGTGCCTGACTGGAGAGTGGTCTCGAGGGGCCACTCTGGACTAGTGTAGGGGCTT
CGGAAGCGTGCACAGGGTGCGTGCATGGGTGTGTGCCTGTGGAAGCACCCCGTCTCCACG
TCCAAAGAAAGTCAGAGGTCGACCTGGGACTTGCTGCTTGCCCAGCCTGTCCTTCCAGAG
CTTTGCCGAGCCTGAGCAAGCGGGCCCTCTTGGTGAAGCCCCACTGCTTGGAGAGGCCCC
CAAGGGCCCCTGGAGGCAGTGCCCGCACCCCCCATCGGGCTTCTAGGGGGGGATCACAGG
GGACCCCTAGAGTCAGGCCACTACGAGCTCTGGGGAGAGGCAAAGACCCCAGAGGGCACC
CCAGCCCCCCTTACTGTGACTCCTCACACTCAGCAATGACCTGTGGGGCGGGGGGGCCCT
GGGACGTTTTTAAACCTAGGGTTTGGAGTCTGGACTAAAGCTCCATCCACGTCACTCACA
AGTTTCTGTTTATATTTCTAGCTTTTTTTAATAAAAATTAAAAAAACCCAGAAAACAGAA
GTTTTCACAGCCCAGGGGCCTGGCACGCCGGTCTGTGCCCATCCGCCCCGCCCCGGCCCA
CCGGCCCCATTCCCTGGGCAGAGTCACACCCAGTAACCCTTTCAGCAACAGACCAGGTCA
CACACACAGCAGCAGTCACTGTAACAGACTGCCACATACACACTCGTCTCACACTCACCT
GTGGGTTTTTGGTTCCGTTCAATTTGGGTTTTTAACTTTACAGGGTCAGTTCTGCTTCAC
CCCTCCTTTTGTATGGAGTTCCATCTGGGGGATTTCACCCCTGCTCCAGTCCTGAGGCCT
CCTGACCCTGACGTTGTGATACACCCCACAGAGATCTATGTTTCTTATATTATTATTGAT
AATAATTATTATAATATTATTATGTAATAAATTTATAAGAAATGGAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACTACAGCAGAGAAGCCTCCCTGCCTCAGACCCGAAGTCTCCCGTTCCGCCCTGTGTG
TGTGTGTGCGCACATGTGCGAGTGTGTGAAACTCGGGGTGTGACTGAGTGCATCGGAGCC
CCACGTGTGCCTGACTGGAGAGTGGTCTCGAGGGGCCACTCTGGACTAGTGTAGGGGCTT
CGGAAGCGTGCACAGGGTGCGTGCATGGGTGTGTGCCTGTGGAAGCACCCCGTCTCCACG
TCCAAAGAAAGTCAGAGGTCGACCTGGGACTTGCTGCTTGCCCAGCCTGTCCTTCCAGAG
CTTTGCCGAGCCTGAGCAAGCGGGCCCTCTTGGTGAAGCCCCACTGCTTGGAGAGGCCCC
CAAGGGCCCCTGGAGGCAGTGCCCGCACCCCCCATCGGGCTTCTAGGGGGGGATCACAGG
GGACCCCTAGAGTCAGGCCACTACGAGCTCTGGGGAGAGGCAAAGACCCCAGAGGGCACC
CCAGCCCCCCTTACTGTGACTCCTCACACTCAGCAATGACCTGTGGGGCGGGGGGGCCCT
GGGACGTTTTTAAACCTAGGGTTTGGAGTCTGGACTAAAGCTCCATCCACGTCACTCACA
AGTTTCTGTTTATATTTCTAGCTTTTTTTAATAAAAATTAAAAAAACCCAGAAAACAGAA
GTTTTCACAGCCCAGGGGCCTGGCACGCCGGTCTGTGCCCATCCGCCCCGCCCCGGCCCA
CCGGCCCCATTCCCTGGGCAGAGTCACACCCAGTAACCCTTTCAGCAACAGACCAGGTCA
CACACACAGCAGCAGTCACTGTAACAGACTGCCACATACACACTCGTCTCACACTCACCT
GTGGGTTTTTGGTTCCGTTCAATTTGGGTTTTTAACTTTACAGGGTCAGTTCTGCTTCAC
CCCTCCTTTTGTATGGAGTTCCATCTGGGGGATTTCACCCCTGCTCCAGTCCTGAGGCCT
CCTGACCCTGACGTTGTGATACACCCCACAGAGATCTATGTTTCTTATATTATTATTGAT
AATAATTATTATAATATTATTATGTAATAAATTTATAAGAAATGGAAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               319-593, - strand, RNAz p=0.992065
               

               
               643-823, - strand, RNAz p=0.97996
               

               
               863-975, - strand, RNAz p=0.994406

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               319-593, - strand, RNAz p=0.992065
               

               
               643-823, - strand, RNAz p=0.97996
               

               
               863-975, - strand, RNAz p=0.994406

Predicted microRNA(s): 2 entry(ies)

More info

Predicted microRNA(s): 2 entry(ies)

Help | Less info


               
               411-512, - strand, RNAmicro p=0.996279
               

               
               936-1032, + strand, RNAmicro p=0.93977

Predicted microRNA(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               411-512, - strand, RNAmicro p=0.996279
               

               
               936-1032, + strand, RNAmicro p=0.93977

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               863-975, UI-H-EZ1-bbg-i-21-0-UI.s1 NCI_CGAP_Ch2 Homo sapiens cDNA clone 
(gb|BQ576067.1|), blast E-value=4e-38, identity=94.74% 
               

               
               863-975, 1572254T6 UTRSNOT05 Homo sapiens cDNA clone 1572254 3', mRNA 
(gb|BU584086.1|), blast E-value=4e-38, identity=94.74% 
               

               
               863-975, UI-H-DF0-bex-f-15-0-UI.s1 NCI_CGAP_DF0 Homo sapiens cDNA clone 
(gb|BU616146.1|), blast E-value=4e-38, identity=94.74% 
               

               
               863-975, UI-H-FG0-bdg-c-06-0-UI.s1 NCI_CGAP_EN1_2 Homo sapiens cDNA clone 
(gb|BU628698.1|), blast E-value=4e-38, identity=94.74% 
               

               
               863-975, NISC_gg03c02.x1 NCI_CGAP_Kid11 Homo sapiens cDNA clone 
(gb|CB047492.1|), blast E-value=4e-38, identity=94.74% 
               

               
               863-975, LIB4217-105-R1-K1-D8 LIB4217 Canis familiaris cDNA clone 
(gb|DN435185.1|), blast E-value=4.06377e-44, identity=95.58%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               863-975, UI-H-EZ1-bbg-i-21-0-UI.s1 NCI_CGAP_Ch2 Homo sapiens cDNA clone 
(gb|BQ576067.1|), blast E-value=4e-38, identity=94.74% 
               

               
               863-975, 1572254T6 UTRSNOT05 Homo sapiens cDNA clone 1572254 3', mRNA 
(gb|BU584086.1|), blast E-value=4e-38, identity=94.74% 
               

               
               863-975, UI-H-DF0-bex-f-15-0-UI.s1 NCI_CGAP_DF0 Homo sapiens cDNA clone 
(gb|BU616146.1|), blast E-value=4e-38, identity=94.74% 
               

               
               863-975, UI-H-FG0-bdg-c-06-0-UI.s1 NCI_CGAP_EN1_2 Homo sapiens cDNA clone 
(gb|BU628698.1|), blast E-value=4e-38, identity=94.74% 
               

               
               863-975, NISC_gg03c02.x1 NCI_CGAP_Kid11 Homo sapiens cDNA clone 
(gb|CB047492.1|), blast E-value=4e-38, identity=94.74% 
               

               
               863-975, LIB4217-105-R1-K1-D8 LIB4217 Canis familiaris cDNA clone 
(gb|DN435185.1|), blast E-value=4.06377e-44, identity=95.58%

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               319-1075, gnl|bosTau2|chr4 (50119687-50118942)
               

               
               319-1075, gnl|Hg17|chr22 (49461048-49461784)
               

               
               319-1075, gnl|Mm7|chr15 (89642368-89643139)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               319-1075, gnl|bosTau2|chr4 (50119687-50118942)
               

               
               319-1075, gnl|Hg17|chr22 (49461048-49461784)
               

               
               319-1075, gnl|Mm7|chr15 (89642368-89643139)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               elu (0.385356)
               

               
               ebs (0.354904)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               ebs (0.354904)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	319-593, - strand, RNAz p=0.992065
	643-823, - strand, RNAz p=0.97996
	863-975, - strand, RNAz p=0.994406

	411-512, - strand, RNAmicro p=0.996279
	936-1032, + strand, RNAmicro p=0.93977

	863-975, UI-H-EZ1-bbg-i-21-0-UI.s1 NCI_CGAP_Ch2 Homo sapiens cDNA clone (gb\|BQ576067.1\|), blast E-value=4e-38, identity=94.74%
	863-975, 1572254T6 UTRSNOT05 Homo sapiens cDNA clone 1572254 3', mRNA (gb\|BU584086.1\|), blast E-value=4e-38, identity=94.74%
	863-975, UI-H-DF0-bex-f-15-0-UI.s1 NCI_CGAP_DF0 Homo sapiens cDNA clone (gb\|BU616146.1\|), blast E-value=4e-38, identity=94.74%
	863-975, UI-H-FG0-bdg-c-06-0-UI.s1 NCI_CGAP_EN1_2 Homo sapiens cDNA clone (gb\|BU628698.1\|), blast E-value=4e-38, identity=94.74%
	863-975, NISC_gg03c02.x1 NCI_CGAP_Kid11 Homo sapiens cDNA clone (gb\|CB047492.1\|), blast E-value=4e-38, identity=94.74%
	863-975, LIB4217-105-R1-K1-D8 LIB4217 Canis familiaris cDNA clone (gb\|DN435185.1\|), blast E-value=4.06377e-44, identity=95.58%

	319-1075, gnl\|bosTau2\|chr4 (50119687-50118942)
	319-1075, gnl\|Hg17\|chr22 (49461048-49461784)
	319-1075, gnl\|Mm7\|chr15 (89642368-89643139)

	elu (0.385356)
	ebs (0.354904)
	fhi (0.169578)
	cki (0.165235)
	pty (0.142714)
	nca (0.136874)
	ecc (0.115035)
	jca (0.11396)