Non-Coding RNA Search

Ss1.1-relu1330c_a4.5

Sequence:


               
               ATGGTCCAGCGATTGACGTACCGTCGTAGGCTATCCTACAACACAGCCTGCAATTTTATT
GTATCCACAGGTATTCACAATGGTCCAGCGATTGACGTACCGTCGTAGGCTATCCTACAA
CACAGCCTCTAACAAAACCAGGCTGTCCCGAACCCCTGGTAATAGAATCGTTTACCTTTA
TACCAAGAAGGTTGGGAAAGCACCAAAATCTGCATGTGGCGTGTGCCCAGGCCGACTTCG
AGGAGTCCGTGCTGTGAGACCTAAAGTTCTCATGAGATTGTCTAAAACGAAAAAACATGT
CAGCCGGGCCTATGGTGGTTCCATGTGTGCTAAATGTGTCCGTGACAGGATCAAGCGTGC
TTTTCTTATCGAGGAGCAGAAAATTGTTGTGAAAGTGTTGAAAGCACAAGCACAGAGTCA
GAAAGCTAAATAAAAAAATGAAGCTTTTTTGAGTAATAAAAAAATCAAAAGCCAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGTCCAGCGATTGACGTACCGTCGTAGGCTATCCTACAACACAGCCTGCAATTTTATT
GTATCCACAGGTATTCACAATGGTCCAGCGATTGACGTACCGTCGTAGGCTATCCTACAA
CACAGCCTCTAACAAAACCAGGCTGTCCCGAACCCCTGGTAATAGAATCGTTTACCTTTA
TACCAAGAAGGTTGGGAAAGCACCAAAATCTGCATGTGGCGTGTGCCCAGGCCGACTTCG
AGGAGTCCGTGCTGTGAGACCTAAAGTTCTCATGAGATTGTCTAAAACGAAAAAACATGT
CAGCCGGGCCTATGGTGGTTCCATGTGTGCTAAATGTGTCCGTGACAGGATCAAGCGTGC
TTTTCTTATCGAGGAGCAGAAAATTGTTGTGAAAGTGTTGAAAGCACAAGCACAGAGTCA
GAAAGCTAAATAAAAAAATGAAGCTTTTTTGAGTAATAAAAAAATCAAAAGCCAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6FG66_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6FG66_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               58-256, - strand, RNAz p=0.969313

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               58-256, - strand, RNAz p=0.969313

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               58-474, gnl|bosTau2|chr1 (406051-406466)
               

               
               58-474, gnl|Hg17|chr1 (164911490-164911875)
               

               
               58-474, gnl|Mm7|chr13 (113331040-113331448)
               


               
               63-463, gnl|bosTau2|chr16 (37509176-37509576)
               

               
               63-463, gnl|Hg17|chr8 (95039112-95038717)
               

               
               63-463, gnl|Mm7|chr6 (71142594-71142991)
               


               
               153-368, gnl|bosTau2|chr11 (34658595-34658810)
               

               
               153-368, gnl|Hg17|chr13 (49833827-49833612)
               

               
               153-368, gnl|Mm7|chr4 (82909191-82908976)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               58-474, gnl|bosTau2|chr1 (406051-406466)
               

               
               58-474, gnl|Hg17|chr1 (164911490-164911875)
               

               
               58-474, gnl|Mm7|chr13 (113331040-113331448)
               


               
               63-463, gnl|bosTau2|chr16 (37509176-37509576)
               

               
               63-463, gnl|Hg17|chr8 (95039112-95038717)
               

               
               63-463, gnl|Mm7|chr6 (71142594-71142991)
               


               
               153-368, gnl|bosTau2|chr11 (34658595-34658810)
               

               
               153-368, gnl|Hg17|chr13 (49833827-49833612)
               

               
               153-368, gnl|Mm7|chr4 (82909191-82908976)

Expressed library(ies): 73 entry(ies)

More info

Expressed library(ies): 73 entry(ies)

Help | Less info


               
               sag (6.21232)
               

               
               rec (4.84597)
               

               
               elu (4.23892)
               

               
               mcp (3.92491)
               

               
               aor (3.90549)
               

               
               amn (2.92398)
               

               
               nje (2.82064)
               

               
               ese (2.53004)
               

               
               mas (2.52366)
               

               
               pty (2.42615)
               

               
               fty (2.28592)
               

               
               jca (2.2792)
               

               
               nca (2.18998)
               

               
               eje (2.17434)
               

               
               cbe (2.15311)
               

               
               lnt (2.13462)
               

               
               nep (2.02317)
               

               
               med (1.97628)
               

               
               nco (1.94081)
               

               
               ill (1.75593)
               

               
               eep (1.7159)
               

               
               fce (1.62955)
               

               
               fli (1.62305)
               

               
               col (1.56006)
               

               
               duo (1.55521)
               

               
               ebs (1.41961)
               

               
               eru (1.32053)
               

               
               nmm (1.19522)
               

               
               eye (1.19352)
               

               
               nlu (1.15009)
               

               
               pro (1.02407)
               

               
               hlv (0.974795)
               

               
               mga (0.96123)
               

               
               ecc (0.920281)
               

               
               ece (0.917221)
               

               
               bfe (0.899146)
               

               
               nbm (0.893921)
               

               
               ton (0.877501)
               

               
               fbs (0.876732)
               

               
               nms (0.855432)
               

               
               jej (0.791374)
               

               
               fcc (0.791139)
               

               
               spc (0.680195)
               

               
               cut (0.679694)
               

               
               csp (0.644745)
               

               
               cag (0.604778)
               

               
               sto (0.539471)
               

               
               ute (0.531138)
               

               
               fhi (0.508733)
               

               
               cly (0.482567)
               

               
               cli (0.458435)
               

               
               csk (0.422238)
               

               
               cov (0.396458)
               

               
               kid (0.389206)
               

               
               thg (0.380373)
               

               
               gul (0.355177)
               

               
               sin (0.349895)
               

               
               hyp (0.285673)
               

               
               ssp (0.271039)
               

               
               mgp (0.230681)
               

               
               ctl (0.153069)
               

               
               eli (0.151814)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)

Expressed library(ies): 73 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (6.21232)
               

               
               rec (4.84597)
               

               
               elu (4.23892)
               

               
               mcp (3.92491)
               

               
               aor (3.90549)
               

               
               amn (2.92398)
               

               
               nje (2.82064)
               

               
               ese (2.53004)
               

               
               mas (2.52366)
               

               
               pty (2.42615)
               

               
               fty (2.28592)
               

               
               jca (2.2792)
               

               
               nca (2.18998)
               

               
               eje (2.17434)
               

               
               cbe (2.15311)
               

               
               lnt (2.13462)
               

               
               nep (2.02317)
               

               
               med (1.97628)
               

               
               nco (1.94081)
               

               
               ill (1.75593)
               

               
               eep (1.7159)
               

               
               fce (1.62955)
               

               
               fli (1.62305)
               

               
               col (1.56006)
               

               
               duo (1.55521)
               

               
               ebs (1.41961)
               

               
               eru (1.32053)
               

               
               nmm (1.19522)
               

               
               eye (1.19352)
               

               
               nlu (1.15009)
               

               
               pro (1.02407)
               

               
               hlv (0.974795)
               

               
               mga (0.96123)
               

               
               ecc (0.920281)
               

               
               ece (0.917221)
               

               
               bfe (0.899146)
               

               
               nbm (0.893921)
               

               
               ton (0.877501)
               

               
               fbs (0.876732)
               

               
               nms (0.855432)
               

               
               jej (0.791374)
               

               
               fcc (0.791139)
               

               
               spc (0.680195)
               

               
               cut (0.679694)
               

               
               csp (0.644745)
               

               
               cag (0.604778)
               

               
               sto (0.539471)
               

               
               ute (0.531138)
               

               
               fhi (0.508733)
               

               
               cly (0.482567)
               

               
               cli (0.458435)
               

               
               csk (0.422238)
               

               
               cov (0.396458)
               

               
               kid (0.389206)
               

               
               thg (0.380373)
               

               
               gul (0.355177)
               

               
               sin (0.349895)
               

               
               hyp (0.285673)
               

               
               ssp (0.271039)
               

               
               mgp (0.230681)
               

               
               ctl (0.153069)
               

               
               eli (0.151814)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)

	58-474, gnl\|bosTau2\|chr1 (406051-406466)
	58-474, gnl\|Hg17\|chr1 (164911490-164911875)
	58-474, gnl\|Mm7\|chr13 (113331040-113331448)

	63-463, gnl\|bosTau2\|chr16 (37509176-37509576)
	63-463, gnl\|Hg17\|chr8 (95039112-95038717)
	63-463, gnl\|Mm7\|chr6 (71142594-71142991)

	153-368, gnl\|bosTau2\|chr11 (34658595-34658810)
	153-368, gnl\|Hg17\|chr13 (49833827-49833612)
	153-368, gnl\|Mm7\|chr4 (82909191-82908976)

	sag (6.21232)
	rec (4.84597)
	elu (4.23892)
	mcp (3.92491)
	aor (3.90549)
	amn (2.92398)
	nje (2.82064)
	ese (2.53004)
	mas (2.52366)
	pty (2.42615)
	fty (2.28592)
	jca (2.2792)
	nca (2.18998)
	eje (2.17434)
	cbe (2.15311)
	lnt (2.13462)
	nep (2.02317)
	med (1.97628)
	nco (1.94081)
	ill (1.75593)
	eep (1.7159)
	fce (1.62955)
	fli (1.62305)
	col (1.56006)
	duo (1.55521)
	ebs (1.41961)
	eru (1.32053)
	nmm (1.19522)
	eye (1.19352)
	nlu (1.15009)
	pro (1.02407)
	hlv (0.974795)
	mga (0.96123)
	ecc (0.920281)
	ece (0.917221)
	bfe (0.899146)
	nbm (0.893921)
	ton (0.877501)
	fbs (0.876732)
	nms (0.855432)
	jej (0.791374)
	fcc (0.791139)
	spc (0.680195)
	cut (0.679694)
	csp (0.644745)
	cag (0.604778)
	sto (0.539471)
	ute (0.531138)
	fhi (0.508733)
	cly (0.482567)
	cli (0.458435)
	csk (0.422238)
	cov (0.396458)
	kid (0.389206)
	thg (0.380373)
	gul (0.355177)
	sin (0.349895)
	hyp (0.285673)
	ssp (0.271039)
	mgp (0.230681)
	ctl (0.153069)
	eli (0.151814)
	isp (0.150376)
	ski (0.146735)
	liv (0.146284)
	lin (0.145603)
	cst (0.140036)
	che (0.136314)
	lyg (0.133103)
	ova (0.129132)
	sug (0.127291)
	bla (0.124347)
	pgl (0.118483)