Non-Coding RNA Search

Ss1.1-relu1330c_j2.5

Sequence:


               
               GTTCGCNCAGGTCGTTAATAAGCTGCGAGAGCTCGGCCTTCATGTCGGAGGCACTGCCCA
GTAGCAGAGGCGGCGGCCCTGCCTCAGGGCCTGGCGAGACCCCGCCCTCCCCCAGCGCCT
CCTCGCGGCTGCTTTCCAGCGTTTCCAGCAAGTCCCCGCATTCGAAGTGCATGGCCACCA
CGAGCTCCTGCGGCGCCTCTGCCTCTTGCTCTGCCGGGCCTCCCTCCCCGGCTCGATCCT
CTTCCTCCTCATTCAGGCAGCCGTCCGTGTGCTCCTCCTCCTCTTCCTCCTGCAGCTCCT
GCTCCTGCTCCTGCTGTTCGCCAAGCAGGTCCTCGGTGATGGAGCCGAGCTTGGGCGCGC
TGCGGCTGCGCTCCACTGGCGGTTTGTAGCAGCAGGGTCCGTGCAGGAGCAGCTTGCGCA
GCGGCACCAGGGGGATGGTGTGCGCGCCCACCAGCTCCTGCTGCTGGTGACGCGCGTCGT
CCCGCCGCTTGAGCCGTTTAAATTCCGCCAGAGCGTTGGCGGACGTCTGGTAGAGCAGCA
GGGCCATGGCCTGCGCCTTCTCGGGCTTGGACACCAGCACCGCGTGGCAGCGTAGCATTA
CTGCCTTGTGCTTGAGCTCGTGCCGGTACACCCAGGCGAAGACCTTGGGCAGTCGCGCGT
CCGCCACGCAGTAGGTAACACGATGCAGCAGGTAGAGGTGGCCTGGGCGGCGCAGCGCGC
GCTCCTCGGCGTGCACCATGCGGATACCCTGCGCACTCACAGTCAGCTTCATCTTGGTGC
CCTGACGGCCCGCCTCGCTCTTGCTCCAGATCTTGCCCACCGCTAGGTCAGTGCAGCCGT
CGCCGCGCGCCTGGATGGTGGTGGCATTGCCCAGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCGCNCAGGTCGTTAATAAGCTGCGAGAGCTCGGCCTTCATGTCGGAGGCACTGCCCA
GTAGCAGAGGCGGCGGCCCTGCCTCAGGGCCTGGCGAGACCCCGCCCTCCCCCAGCGCCT
CCTCGCGGCTGCTTTCCAGCGTTTCCAGCAAGTCCCCGCATTCGAAGTGCATGGCCACCA
CGAGCTCCTGCGGCGCCTCTGCCTCTTGCTCTGCCGGGCCTCCCTCCCCGGCTCGATCCT
CTTCCTCCTCATTCAGGCAGCCGTCCGTGTGCTCCTCCTCCTCTTCCTCCTGCAGCTCCT
GCTCCTGCTCCTGCTGTTCGCCAAGCAGGTCCTCGGTGATGGAGCCGAGCTTGGGCGCGC
TGCGGCTGCGCTCCACTGGCGGTTTGTAGCAGCAGGGTCCGTGCAGGAGCAGCTTGCGCA
GCGGCACCAGGGGGATGGTGTGCGCGCCCACCAGCTCCTGCTGCTGGTGACGCGCGTCGT
CCCGCCGCTTGAGCCGTTTAAATTCCGCCAGAGCGTTGGCGGACGTCTGGTAGAGCAGCA
GGGCCATGGCCTGCGCCTTCTCGGGCTTGGACACCAGCACCGCGTGGCAGCGTAGCATTA
CTGCCTTGTGCTTGAGCTCGTGCCGGTACACCCAGGCGAAGACCTTGGGCAGTCGCGCGT
CCGCCACGCAGTAGGTAACACGATGCAGCAGGTAGAGGTGGCCTGGGCGGCGCAGCGCGC
GCTCCTCGGCGTGCACCATGCGGATACCCTGCGCACTCACAGTCAGCTTCATCTTGGTGC
CCTGACGGCCCGCCTCGCTCTTGCTCCAGATCTTGCCCACCGCTAGGTCAGTGCAGCCGT
CGCCGCGCGCCTGGATGGTGGTGGCATTGCCCAGGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|50752415|ref|XP_426700.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50752415|ref|XP_426700.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               454-571, + strand, RNAz p=0.927633

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               454-571, + strand, RNAz p=0.927633

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               454-876, gnl|bosTau2|chr17 (41929498-41929064)
               

               
               454-876, gnl|Hg17|chr1 (20625433-20624999)
               

               
               454-876, gnl|Mm7|chr4 (137773791-137774222)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               454-876, gnl|bosTau2|chr17 (41929498-41929064)
               

               
               454-876, gnl|Hg17|chr1 (20625433-20624999)
               

               
               454-876, gnl|Mm7|chr4 (137773791-137774222)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               elu (0.385356)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               eep (0.122564)

	454-876, gnl\|bosTau2\|chr17 (41929498-41929064)
	454-876, gnl\|Hg17\|chr1 (20625433-20624999)
	454-876, gnl\|Mm7\|chr4 (137773791-137774222)