Non-Coding RNA Search

Ss1.1-relu1330c_k24.5

Sequence:


               
               CCAGAAACAACCATCCAAAGCCAGACACCCCCTCCTCCGGTGAGCCACGAGGGTGATGGT
TATCACAAAGTTATCCTAAGTCAAAATTTTCTTGTACTTCGGGGAAACAGCAGTCACCAT
TTAACAGAGGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTCCACTGAGCCATTTTATTTGCACATATGTATTACA
TCCCTAGAAAAAGAATCCAAGGATTTTCCCTCCTGTGTGTTTTCGTCTTGCTTCTTCATG
GTCCATGATGCCAGCTGAGGTTGTAAGTACAATGAACCCAAACTGACGGGATGGGAGCAG
GTTATTCTGCCATTTTTCTAGATCTTTGAGTTGCACATCAAACCTTGGACTGATAACTCC
ACACTTATTTAGCCTGCCTGTGAGGTTCACAACAATTTTCCCAGCTCTATGATCGTCGAT
GATTTCAAATTCGCCAATGTAACCATGCTTCATCATCACAGTTAGAAACCTGACGATGAC
TTTGGAGCACGGCCTAATAAGAACCTGGCGTTTGCCTCTCTTTTCGGCATTGTTGATGCT
CTTGAGGGCATCGGCCAGGACATTCATGCGCACCATTGTGGCGGCACGGAAAGATGGCGG
TAAGGACAAGGGCCAAAGCATGCTTTCAAACGACAACAGGAGGAGTCCGACCGGCTTCCT
CAAGCTCAACAAGTGTCTGGGGGAAAACCTGGAGCCCAGAAGACACCAGCAAACCTCCAC
CCCAAGCAGGGTGCAATCTTCCCTGCCGAAGGGGCCTCAGACTCCCAAGGCCGCGCCCCG
TTTCCCAGGACGAAGGGCTCTCCGCACCGGACCCCGGTCCCGACGCGCGACGGGACACGC
CGCACGCGGGCGCGCGCGGCGGCCCGCCGGCGGGGACGGCGGGGGACCGGCTATCCGAGG
CCAACCGAGGCTCCCGCGGCGCTGCCGTATCGTTCCGCCTGGGCGGGATTCTGACTTAGA
GGCGTTCAGTCATAATCCCACAGATGGTAGCTTCGCCCCATTGGCTCCTCAGCCAAGCAC
ATACACCAAATGTCTGAACCTGCGGTTCCTCTCGTACTGAGCAGGATTACCATGGCAACA
AAGACCGAGCCTCAGACCACAGGATGGCACCGATAGCGAACGGATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGAAACAACCATCCAAAGCCAGACACCCCCTCCTCCGGTGAGCCACGAGGGTGATGGT
TATCACAAAGTTATCCTAAGTCAAAATTTTCTTGTACTTCGGGGAAACAGCAGTCACCAT
TTAACAGAGGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTCCACTGAGCCATTTTATTTGCACATATGTATTACA
TCCCTAGAAAAAGAATCCAAGGATTTTCCCTCCTGTGTGTTTTCGTCTTGCTTCTTCATG
GTCCATGATGCCAGCTGAGGTTGTAAGTACAATGAACCCAAACTGACGGGATGGGAGCAG
GTTATTCTGCCATTTTTCTAGATCTTTGAGTTGCACATCAAACCTTGGACTGATAACTCC
ACACTTATTTAGCCTGCCTGTGAGGTTCACAACAATTTTCCCAGCTCTATGATCGTCGAT
GATTTCAAATTCGCCAATGTAACCATGCTTCATCATCACAGTTAGAAACCTGACGATGAC
TTTGGAGCACGGCCTAATAAGAACCTGGCGTTTGCCTCTCTTTTCGGCATTGTTGATGCT
CTTGAGGGCATCGGCCAGGACATTCATGCGCACCATTGTGGCGGCACGGAAAGATGGCGG
TAAGGACAAGGGCCAAAGCATGCTTTCAAACGACAACAGGAGGAGTCCGACCGGCTTCCT
CAAGCTCAACAAGTGTCTGGGGGAAAACCTGGAGCCCAGAAGACACCAGCAAACCTCCAC
CCCAAGCAGGGTGCAATCTTCCCTGCCGAAGGGGCCTCAGACTCCCAAGGCCGCGCCCCG
TTTCCCAGGACGAAGGGCTCTCCGCACCGGACCCCGGTCCCGACGCGCGACGGGACACGC
CGCACGCGGGCGCGCGCGGCGGCCCGCCGGCGGGGACGGCGGGGGACCGGCTATCCGAGG
CCAACCGAGGCTCCCGCGGCGCTGCCGTATCGTTCCGCCTGGGCGGGATTCTGACTTAGA
GGCGTTCAGTCATAATCCCACAGATGGTAGCTTCGCCCCATTGGCTCCTCAGCCAAGCAC
ATACACCAAATGTCTGAACCTGCGGTTCCTCTCGTACTGAGCAGGATTACCATGGCAACA
AAGACCGAGCCTCAGACCACAGGATGGCACCGATAGCGAACGGATAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|28374352|gb|AAH46113.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|28374352|gb|AAH46113.1|

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               174-287, - strand, RNAz p=0.947531
               

               
               458-671, - strand, RNAz p=0.997905
               

               
               928-1045, - strand, RNAz p=0.940301

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               174-287, - strand, RNAz p=0.947531
               

               
               458-671, - strand, RNAz p=0.997905
               

               
               928-1045, - strand, RNAz p=0.940301

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               174-671, gnl|bosTau2|chr4 (1275979-1276472)
               

               
               174-671, gnl|Hg17|chr8 (30094381-30094872)
               

               
               174-671, gnl|Mm7|chr11 (6124592-6125069)
               


               
               190-664, gnl|bosTau2|chr10 (59315099-59314628)
               

               
               190-664, gnl|Hg17|chr8 (30094377-30094865)
               

               
               190-664, gnl|Mm7|chr11 (6124597-6125067)
               


               
               908-1141, gnl|bosTau2|chr10 (49444733-49444963)
               

               
               908-1141, gnl|Hg17|chr2 (132870151-132870389)
               

               
               908-1141, gnl|Mm7|chrUn_random (8649749-8649981)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               174-671, gnl|bosTau2|chr4 (1275979-1276472)
               

               
               174-671, gnl|Hg17|chr8 (30094381-30094872)
               

               
               174-671, gnl|Mm7|chr11 (6124592-6125069)
               


               
               190-664, gnl|bosTau2|chr10 (59315099-59314628)
               

               
               190-664, gnl|Hg17|chr8 (30094377-30094865)
               

               
               190-664, gnl|Mm7|chr11 (6124597-6125067)
               


               
               908-1141, gnl|bosTau2|chr10 (49444733-49444963)
               

               
               908-1141, gnl|Hg17|chr2 (132870151-132870389)
               

               
               908-1141, gnl|Mm7|chrUn_random (8649749-8649981)

Expressed library(ies): 77 entry(ies)

More info

Expressed library(ies): 77 entry(ies)

Help | Less info


               
               lnt (4.26925)
               

               
               eje (3.75568)
               

               
               nep (2.75887)
               

               
               nlu (2.68353)
               

               
               med (2.6738)
               

               
               amn (2.50627)
               

               
               fty (2.46175)
               

               
               nbm (2.38379)
               

               
               nje (2.32288)
               

               
               eru (2.16086)
               

               
               ese (2.02404)
               

               
               sag (2.00987)
               

               
               elu (1.92678)
               

               
               nca (1.91623)
               

               
               csp (1.77305)
               

               
               ill (1.75593)
               

               
               fbs (1.57812)
               

               
               mcp (1.53584)
               

               
               nmm (1.46082)
               

               
               cbe (1.43541)
               

               
               fli (1.42017)
               

               
               rec (1.38456)
               

               
               eye (1.36402)
               

               
               pty (1.28443)
               

               
               duo (1.20961)
               

               
               col (1.17005)
               

               
               jca (1.1396)
               

               
               nco (1.13214)
               

               
               cga (1.11638)
               

               
               eep (1.10308)
               

               
               ebs (1.06471)
               

               
               bfe (1.049)
               

               
               fcc (0.988924)
               

               
               hlv (0.974795)
               

               
               ecc (0.920281)
               

               
               cag (0.907167)
               

               
               ton (0.877501)
               

               
               mas (0.84122)
               

               
               fce (0.814775)
               

               
               aor (0.781097)
               

               
               eli (0.759071)
               

               
               csk (0.70373)
               

               
               ece (0.687916)
               

               
               ute (0.663922)
               

               
               ova (0.645661)
               

               
               nms (0.641574)
               

               
               sme (0.610874)
               

               
               cly (0.603209)
               

               
               pgl (0.592417)
               

               
               pro (0.512033)
               

               
               fhi (0.508733)
               

               
               jej (0.494609)
               

               
               mga (0.480615)
               

               
               mgp (0.461361)
               

               
               hyp (0.42851)
               

               
               che (0.408942)
               

               
               lyg (0.399308)
               

               
               cov (0.396458)
               

               
               cmu (0.372787)
               

               
               sto (0.359648)
               

               
               vin (0.332557)
               

               
               cst (0.280073)
               

               
               tra (0.246184)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               cki (0.165235)
               

               
               cli (0.152812)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)

Expressed library(ies): 77 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (4.26925)
               

               
               eje (3.75568)
               

               
               nep (2.75887)
               

               
               nlu (2.68353)
               

               
               med (2.6738)
               

               
               amn (2.50627)
               

               
               fty (2.46175)
               

               
               nbm (2.38379)
               

               
               nje (2.32288)
               

               
               eru (2.16086)
               

               
               ese (2.02404)
               

               
               sag (2.00987)
               

               
               elu (1.92678)
               

               
               nca (1.91623)
               

               
               csp (1.77305)
               

               
               ill (1.75593)
               

               
               fbs (1.57812)
               

               
               mcp (1.53584)
               

               
               nmm (1.46082)
               

               
               cbe (1.43541)
               

               
               fli (1.42017)
               

               
               rec (1.38456)
               

               
               eye (1.36402)
               

               
               pty (1.28443)
               

               
               duo (1.20961)
               

               
               col (1.17005)
               

               
               jca (1.1396)
               

               
               nco (1.13214)
               

               
               cga (1.11638)
               

               
               eep (1.10308)
               

               
               ebs (1.06471)
               

               
               bfe (1.049)
               

               
               fcc (0.988924)
               

               
               hlv (0.974795)
               

               
               ecc (0.920281)
               

               
               cag (0.907167)
               

               
               ton (0.877501)
               

               
               mas (0.84122)
               

               
               fce (0.814775)
               

               
               aor (0.781097)
               

               
               eli (0.759071)
               

               
               csk (0.70373)
               

               
               ece (0.687916)
               

               
               ute (0.663922)
               

               
               ova (0.645661)
               

               
               nms (0.641574)
               

               
               sme (0.610874)
               

               
               cly (0.603209)
               

               
               pgl (0.592417)
               

               
               pro (0.512033)
               

               
               fhi (0.508733)
               

               
               jej (0.494609)
               

               
               mga (0.480615)
               

               
               mgp (0.461361)
               

               
               hyp (0.42851)
               

               
               che (0.408942)
               

               
               lyg (0.399308)
               

               
               cov (0.396458)
               

               
               cmu (0.372787)
               

               
               sto (0.359648)
               

               
               vin (0.332557)
               

               
               cst (0.280073)
               

               
               tra (0.246184)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               cki (0.165235)
               

               
               cli (0.152812)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)

	174-287, - strand, RNAz p=0.947531
	458-671, - strand, RNAz p=0.997905
	928-1045, - strand, RNAz p=0.940301

	174-671, gnl\|bosTau2\|chr4 (1275979-1276472)
	174-671, gnl\|Hg17\|chr8 (30094381-30094872)
	174-671, gnl\|Mm7\|chr11 (6124592-6125069)

	190-664, gnl\|bosTau2\|chr10 (59315099-59314628)
	190-664, gnl\|Hg17\|chr8 (30094377-30094865)
	190-664, gnl\|Mm7\|chr11 (6124597-6125067)

	908-1141, gnl\|bosTau2\|chr10 (49444733-49444963)
	908-1141, gnl\|Hg17\|chr2 (132870151-132870389)
	908-1141, gnl\|Mm7\|chrUn_random (8649749-8649981)

	lnt (4.26925)
	eje (3.75568)
	nep (2.75887)
	nlu (2.68353)
	med (2.6738)
	amn (2.50627)
	fty (2.46175)
	nbm (2.38379)
	nje (2.32288)
	eru (2.16086)
	ese (2.02404)
	sag (2.00987)
	elu (1.92678)
	nca (1.91623)
	csp (1.77305)
	ill (1.75593)
	fbs (1.57812)
	mcp (1.53584)
	nmm (1.46082)
	cbe (1.43541)
	fli (1.42017)
	rec (1.38456)
	eye (1.36402)
	pty (1.28443)
	duo (1.20961)
	col (1.17005)
	jca (1.1396)
	nco (1.13214)
	cga (1.11638)
	eep (1.10308)
	ebs (1.06471)
	bfe (1.049)
	fcc (0.988924)
	hlv (0.974795)
	ecc (0.920281)
	cag (0.907167)
	ton (0.877501)
	mas (0.84122)
	fce (0.814775)
	aor (0.781097)
	eli (0.759071)
	csk (0.70373)
	ece (0.687916)
	ute (0.663922)
	ova (0.645661)
	nms (0.641574)
	sme (0.610874)
	cly (0.603209)
	pgl (0.592417)
	pro (0.512033)
	fhi (0.508733)
	jej (0.494609)
	mga (0.480615)
	mgp (0.461361)
	hyp (0.42851)
	che (0.408942)
	lyg (0.399308)
	cov (0.396458)
	cmu (0.372787)
	sto (0.359648)
	vin (0.332557)
	cst (0.280073)
	tra (0.246184)
	mgm (0.180343)
	gul (0.177588)
	cki (0.165235)
	cli (0.152812)
	fat (0.147427)
	lin (0.145603)
	ssp (0.13552)
	pla (0.133672)
	kid (0.129735)
	ret (0.128733)
	thg (0.126791)
	bla (0.124347)
	cbl (0.114797)
	spc (0.113366)