Non-Coding RNA Search

Ss1.1-relu1330c_m24.5

Sequence:


               
               ATGGCTCGTACCAAGCAGACCGCTCGCAAGTCCACCGGCGGCAAGGCGCCGCGCAAGCAG
CTGGCCACCAAGGCGGCCCGCAAGAGCGCGCCCGCCACCGGCGGCGTGAAGAAGCCGCAC
CGCTACCGGCCCGGCACGGTGGCCCTGCGCGAGATCCGGCGCTACCAGAAGTCCACGGAG
CTGCTGATCCGCAAGCTGCCGTTCCAGCGGCTGGTGCGCGAGATCGCGCAGGACTTCAAG
ACGGACCTGCGCTTCCAGAGCTCGGCCGTGATGGCGCTGCAGGAGGCGTGCGAGGCCTAC
CTGGTGGGGCTCTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAGCGCGTCACCATC
ATGCCCAAGGACATCCAGCTGGCTCGCCGCATCCGCGGGGAGAGGGCGTAAATTGTTTTC
TCTTTCCGACTTTAAACCCAAAGGCTCTTTTCAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGCTCGTACCAAGCAGACCGCTCGCAAGTCCACCGGCGGCAAGGCGCCGCGCAAGCAG
CTGGCCACCAAGGCGGCCCGCAAGAGCGCGCCCGCCACCGGCGGCGTGAAGAAGCCGCAC
CGCTACCGGCCCGGCACGGTGGCCCTGCGCGAGATCCGGCGCTACCAGAAGTCCACGGAG
CTGCTGATCCGCAAGCTGCCGTTCCAGCGGCTGGTGCGCGAGATCGCGCAGGACTTCAAG
ACGGACCTGCGCTTCCAGAGCTCGGCCGTGATGGCGCTGCAGGAGGCGTGCGAGGCCTAC
CTGGTGGGGCTCTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAGCGCGTCACCATC
ATGCCCAAGGACATCCAGCTGGCTCGCCGCATCCGCGGGGAGAGGGCGTAAATTGTTTTC
TCTTTCCGACTTTAAACCCAAAGGCTCTTTTCAGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61556817|ref|NP_001013074.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61556817|ref|NP_001013074.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-279, - strand, RNAz p=0.922036

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-279, - strand, RNAz p=0.922036

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-411, gnl|bosTau2|chr11 (1692759-1692349)
               

               
               1-411, gnl|Hg17|chr2 (175410143-175410553)
               

               
               1-411, gnl|Mm7|chr16 (91164500-91164090)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-411, gnl|bosTau2|chr11 (1692759-1692349)
               

               
               1-411, gnl|Hg17|chr2 (175410143-175410553)
               

               
               1-411, gnl|Mm7|chr16 (91164500-91164090)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               elu (0.385356)
               

               
               mgp (0.230681)
               

               
               fty (0.17584)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               mgp (0.230681)
               

               
               fty (0.17584)

	1-411, gnl\|bosTau2\|chr11 (1692759-1692349)
	1-411, gnl\|Hg17\|chr2 (175410143-175410553)
	1-411, gnl\|Mm7\|chr16 (91164500-91164090)