Non-Coding RNA Search

Ss1.1-relu1332c_o13.5

Sequence:


               
               TTGAAGGACAATTCATGGCCAAGAAGATTCATGCTGAGGGCCTGGGCTATCGAGTCATGC
CTAAGACAAAGATTTTGGCCACTGGAGGGGCATCTCATAACAAAGACATCTTACAGGTGC
TTGCAGATGTGTTTGGTGCCCCAGTGTATGTCATAGACACTGCCAACTCAGCCTGTGTGG
GCTCTGCTTACCGAGCTTTCCATGGCCTTGCAGCTGGAACCAACATGCCCTTCTCAGAGG
TTGTGAAGCTAGCCCCAAATCCCAGATTAGCTGCTACCCCAACCCCGGGAGCTTTTCAGG
TCTACGAGGCCCTCCTCCAGCGGTATGCTGTGCTTGAGCAGAGAGTCCTGACCCAGACCC
GGAGGCCTTCTGAATGAATGCTGCAGGCCCAGGTTCATTGATTCTGCTTGGAGACATGGC
TCAGGAAAGCAGGGATCCTCTTCCCTGTTGCAAGCAGCTCTGCCTGCCCACCTGACTCCT
TGCAGTGCTCCAGCCTTACCTAGGACCAACTTCAAGCCCACCTTAGCACACCATTCCTCA
ACATAGATGGGTGGCTTGTGTTCCTGTGCCCTTGTGCCTGGGGCAGGAAAGCATCTCTCT
TTTTCTGTCTTTTATCCCAGGAGGCAAGATAACACTGAGCTTGTGATATGTCTAATAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGAAGGACAATTCATGGCCAAGAAGATTCATGCTGAGGGCCTGGGCTATCGAGTCATGC
CTAAGACAAAGATTTTGGCCACTGGAGGGGCATCTCATAACAAAGACATCTTACAGGTGC
TTGCAGATGTGTTTGGTGCCCCAGTGTATGTCATAGACACTGCCAACTCAGCCTGTGTGG
GCTCTGCTTACCGAGCTTTCCATGGCCTTGCAGCTGGAACCAACATGCCCTTCTCAGAGG
TTGTGAAGCTAGCCCCAAATCCCAGATTAGCTGCTACCCCAACCCCGGGAGCTTTTCAGG
TCTACGAGGCCCTCCTCCAGCGGTATGCTGTGCTTGAGCAGAGAGTCCTGACCCAGACCC
GGAGGCCTTCTGAATGAATGCTGCAGGCCCAGGTTCATTGATTCTGCTTGGAGACATGGC
TCAGGAAAGCAGGGATCCTCTTCCCTGTTGCAAGCAGCTCTGCCTGCCCACCTGACTCCT
TGCAGTGCTCCAGCCTTACCTAGGACCAACTTCAAGCCCACCTTAGCACACCATTCCTCA
ACATAGATGGGTGGCTTGTGTTCCTGTGCCCTTGTGCCTGGGGCAGGAAAGCATCTCTCT
TTTTCTGTCTTTTATCCCAGGAGGCAAGATAACACTGAGCTTGTGATATGTCTAATAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|20071375|gb|AAH26406.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|20071375|gb|AAH26406.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               506-623, + strand, RNAz p=0.608839

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               506-623, + strand, RNAz p=0.608839

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_005108, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_005108, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               292-660, gnl|bosTau2|chr22 (8520821-8520447)
               

               
               292-660, gnl|Hg17|chr3 (38429423-38429796)
               

               
               292-660, gnl|Mm7|chr9 (119071937-119072245)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               292-660, gnl|bosTau2|chr22 (8520821-8520447)
               

               
               292-660, gnl|Hg17|chr3 (38429423-38429796)
               

               
               292-660, gnl|Mm7|chr9 (119071937-119072245)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               elu (0.385356)
               

               
               nca (0.136874)
               

               
               cly (0.120642)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               nca (0.136874)
               

               
               cly (0.120642)

	292-660, gnl\|bosTau2\|chr22 (8520821-8520447)
	292-660, gnl\|Hg17\|chr3 (38429423-38429796)
	292-660, gnl\|Mm7\|chr9 (119071937-119072245)