Ss1.1-relu1335c_f20.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTGGCGACCTCCTGGAGCAGCTGGTGGAAGAGATCACGGGCTCCCTGTCTGGCCCAGCC AAGGACTTCTACCAACGCGAATTTGACTTCTTCAACAAGATCACCAATGTGTCAGCCATC ATCAAGCCCTACCCTAAAGGCGACGAGAGAAAGAAAGCTTGTCTGTCGGCTCTATCTGAA GTGAAGGTGCAGCCTGGCTGCTACCTGCCCAGCAACCCCGAAGCCATCGTGCTGGACATT GACTACAAGTCCGGGACACCCATGCAGAGTGCTGCAAAAGCCCCATATCTGGCTAAGTTC AAGGTGAAGCGATGCGGAGTTAGCGAACTTGAGAAAGAAGGGCTGCGGTGCCGTTCCGAC TCCGAGGATGAGGGCAGCACGCAGGAGGCCGATGGCCAGAAGATCTCCTGGCAGGCAGCC ATCTTCAAAGTGGGAGACGACTGCCGACAGGACATGCTGGCCCTGCAGATCATCGACCTC TTCAAAAACATCTTCCAGCTGGTGGGCCTCGACCTCTTCGTTTTCCCATACCGGGTGGTG GCCACTGCACCCGGGTGTGGAGTGATTGAGTGCATCCCTGACTGCACCTCCCGGGACCAG CTGGGCCGCCAGACCGACTTCGGCATGTATGACTACTTCACGCGCCAGTACGGGGACGAG TCCACCCTGGCCTTCCAACAGGCACGTTACAACTTCATCCGCAGCATGGCCGCCTACAGC CTCCTGCTCTTCCTGCTGCAGATCAAGGACAGGCACAACGGCAACATCATGCTGGACAAG AAGGGCCACATCATCCACATCGACTTCGGCTTCATGTTTGAAAGCTCACCAGGCGGCAAC CTCGGCTGGGAACCAGACATCAAGCTGACGGATGAGATGGTGATGATCATGGGGGGCAAA ATGGAGGCCACCCCCTTCAAGTGGTTCATGGAGATGTGTGTCCGCGGCTACCTGGCTGTG CGGCCCTACATGGATGCCGTCGTCTCTCTGGTCACTCTCATGCTGGACACGGGCCTGCCC TGCTTCCGCGGCCAGACAATCAAGCTCTTAAAGCACAGGTTCAGCCCCAACATGACGGAG CGAGAGGCCGCGAATTTCATCATGAAGGTCATTCAGAGCTGCTTCCTCAGCAACAGGAGC CGGACCTATGACATGATCCAGTACTATCAGAATGACATCCCCTACTGAGGGGGCAGAGCG CCCACAATCGTGGAGCCGCGGGCACCTGCCCACTTGGCCGCTGTGTGCAGCAGCCGCATT CATCTGATGGACAAATGGAGCGGAGCATGCCCCCTGCAGAGCCTGGCAATCTGCTGCCCC CGGGGTGCCGCCCCCCACGGCCTGTGCAGCCAGAGCGACAATCAGCCAGTCTCTGCAGGG TGAGTGCTGTTTGCACTGGACACATTCCCTACCTGTCTTATCTCAGAGGTACATGAAGTA TTTTCTTGTGTATAAAAAAAAAAAACAAGATTCAACCAATCGAACAAAATAAAAACAAAA ACCTCAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTGGCGACCTCCTGGAGCAGCTGGTGGAAGAGATCACGGGCTCCCTGTCTGGCCCAGCC AAGGACTTCTACCAACGCGAATTTGACTTCTTCAACAAGATCACCAATGTGTCAGCCATC ATCAAGCCCTACCCTAAAGGCGACGAGAGAAAGAAAGCTTGTCTGTCGGCTCTATCTGAA GTGAAGGTGCAGCCTGGCTGCTACCTGCCCAGCAACCCCGAAGCCATCGTGCTGGACATT GACTACAAGTCCGGGACACCCATGCAGAGTGCTGCAAAAGCCCCATATCTGGCTAAGTTC AAGGTGAAGCGATGCGGAGTTAGCGAACTTGAGAAAGAAGGGCTGCGGTGCCGTTCCGAC TCCGAGGATGAGGGCAGCACGCAGGAGGCCGATGGCCAGAAGATCTCCTGGCAGGCAGCC ATCTTCAAAGTGGGAGACGACTGCCGACAGGACATGCTGGCCCTGCAGATCATCGACCTC TTCAAAAACATCTTCCAGCTGGTGGGCCTCGACCTCTTCGTTTTCCCATACCGGGTGGTG GCCACTGCACCCGGGTGTGGAGTGATTGAGTGCATCCCTGACTGCACCTCCCGGGACCAG CTGGGCCGCCAGACCGACTTCGGCATGTATGACTACTTCACGCGCCAGTACGGGGACGAG TCCACCCTGGCCTTCCAACAGGCACGTTACAACTTCATCCGCAGCATGGCCGCCTACAGC CTCCTGCTCTTCCTGCTGCAGATCAAGGACAGGCACAACGGCAACATCATGCTGGACAAG AAGGGCCACATCATCCACATCGACTTCGGCTTCATGTTTGAAAGCTCACCAGGCGGCAAC CTCGGCTGGGAACCAGACATCAAGCTGACGGATGAGATGGTGATGATCATGGGGGGCAAA ATGGAGGCCACCCCCTTCAAGTGGTTCATGGAGATGTGTGTCCGCGGCTACCTGGCTGTG CGGCCCTACATGGATGCCGTCGTCTCTCTGGTCACTCTCATGCTGGACACGGGCCTGCCC TGCTTCCGCGGCCAGACAATCAAGCTCTTAAAGCACAGGTTCAGCCCCAACATGACGGAG CGAGAGGCCGCGAATTTCATCATGAAGGTCATTCAGAGCTGCTTCCTCAGCAACAGGAGC CGGACCTATGACATGATCCAGTACTATCAGAATGACATCCCCTACTGAGGGGGCAGAGCG CCCACAATCGTGGAGCCGCGGGCACCTGCCCACTTGGCCGCTGTGTGCAGCAGCCGCATT CATCTGATGGACAAATGGAGCGGAGCATGCCCCCTGCAGAGCCTGGCAATCTGCTGCCCC CGGGGTGCCGCCCCCCACGGCCTGTGCAGCCAGAGCGACAATCAGCCAGTCTCTGCAGGG TGAGTGCTGTTTGCACTGGACACATTCCCTACCTGTCTTATCTCAGAGGTACATGAAGTA TTTTCTTGTGTATAAAAAAAAAAAACAAGATTCAACCAATCGAACAAAATAAAAACAAAA ACCTCAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 339-451, - strand, RNAz p=0.946656 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 339-451, - strand, RNAz p=0.946656 |
| Aligned organism(s): 73 entry(ies) | More info |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
| 1-126, gnl|bosTau2|chr17 (45285327-45285452) | |
| 1-126, gnl|canFam2|chr26 (33804768-33804613) | |
| 1-126, gnl|danRer3|chrUn (27770372-27770524) | |
| 1-126, gnl|dasNov1|scaffold_12671 (6808-6989) | |
| 1-126, gnl|fr1|chrUn (28686107-28686246) | |
| 1-126, gnl|galGal2|chr15 (124791-124618) | |
| 1-126, gnl|hg17|chr22 (18769048-18769221) | |
| 1-126, gnl|Hg17|chr22 (19397659-19397534) | |
| 1-126, gnl|loxAfr1|scaffold_12650 (29708-29534) | |
| 1-126, gnl|mm7|chr16 (16836359-16836530) | |
| 1-126, gnl|Mm7|chr16 (16836509-16836384) | |
| 1-126, gnl|monDom2|scaffold_214 (315172-315002) | |
| 1-126, gnl|oryCun1|scaffold_174951 (16614-16440) | |
| 1-126, gnl|panTro1|chr23 (20118140-20118313) | |
| 1-126, gnl|rheMac2|chr10 (65199650-65199479) | |
| 1-126, gnl|rn3|chr11 (85760916-85760745) | |
| 1-126, gnl|tetNig1|chr12 (3205799-3205647) | |
| 1-126, gnl|xenTro1|scaffold_169 (1791969-1791802) | |
| 339-451, gnl|bosTau2|chr17 (45287962-45288074) | |
| 339-451, gnl|Hg17|chr22 (19392234-19392122) | |
| 339-451, gnl|Mm7|chr16 (16833144-16833032) | |
| 539-682, gnl|bosTau2|chr17 (45288372-45288515) | |
| 539-682, gnl|canFam2|chr26 (33809443-33809292) | |
| 539-682, gnl|danRer3|chrUn (27764462-27764607) | |
| 539-682, gnl|echTel1|scaffold_321304 (3111-3260) | |
| 539-682, gnl|fr1|chrUn (28684751-28684900) | |
| 539-682, gnl|galGal2|chr15 (130033-129894) | |
| 539-682, gnl|hg17|chr22 (18762848-18762998) | |
| 539-682, gnl|Hg17|chr22 (19391469-19391327) | |
| 539-682, gnl|loxAfr1|scaffold_12650 (33327-33176) | |
| 539-682, gnl|mm7|chr16 (16832349-16832502) | |
| 539-682, gnl|Mm7|chr16 (16832499-16832349) | |
| 539-682, gnl|monDom2|scaffold_214 (318046-317891) | |
| 539-682, gnl|oryCun1|scaffold_174951 (21150-20993) | |
| 539-682, gnl|panTro1|chr23_random (3925966-3926116) | |
| 539-682, gnl|rheMac2|chr10 (65205327-65205176) | |
| 539-682, gnl|rn3|chr11 (85764866-85764710) | |
| 539-682, gnl|tetNig1|chr12 (3207401-3207253) | |
| 539-682, gnl|xenTro1|scaffold_169 (1798565-1798435) | |
| 802-963, gnl|bosTau2|chr17 (45288946-45289107) | |
| 802-963, gnl|canFam2|chr26 (33810618-33810445) | |
| 802-963, gnl|canFam2|chr26 (33810617-33810468) | |
| 802-963, gnl|danRer3|chrUn (27761528-27761701) | |
| 802-963, gnl|danRer3|chrUn (27761529-27761678) | |
| 802-963, gnl|echTel1|scaffold_321304 (2133-2305) | |
| 802-963, gnl|echTel1|scaffold_321304 (2132-2283) | |
| 802-963, gnl|fr1|chrUn (28684186-28684358) | |
| 802-963, gnl|fr1|chrUn (28684187-28684350) | |
| 802-963, gnl|galGal2|chr15 (131253-131080) | |
| 802-963, gnl|hg17|chr22 (18761068-18761240) | |
| 802-963, gnl|Hg17|chr22 (19389701-19389540) | |
| 802-963, gnl|hg17|chr6 (134464226-134464391) | |
| 802-963, gnl|loxAfr1|scaffold_12650 (34278-34105) | |
| 802-963, gnl|loxAfr1|scaffold_12650 (34279-34128) | |
| 802-963, gnl|mm7|chr16 (16831579-16831752) | |
| 802-963, gnl|mm7|chr16 (16831578-16831729) | |
| 802-963, gnl|Mm7|chr16 (16831742-16831581) | |
| 802-963, gnl|monDom2|scaffold_214 (322541-322368) | |
| 802-963, gnl|monDom2|scaffold_214 (322542-322391) | |
| 802-963, gnl|oryCun1|scaffold_174951 (22146-21973) | |
| 802-963, gnl|oryCun1|scaffold_174951 (22147-21996) | |
| 802-963, gnl|panTro1|chr23 (18748138-18748310) | |
| 802-963, gnl|panTro1|chr5 (137106447-137106612) | |
| 802-963, gnl|rheMac2|chr4 (129756381-129756230) | |
| 802-963, gnl|rheMac2|chr4 (129756386-129756222) | |
| 802-963, gnl|rn3|chr11 (85765614-85765441) | |
| 802-963, gnl|rn3|chr11 (85765619-85765464) | |
| 802-963, gnl|tetNig1|chr12 (3207942-3207771) | |
| 802-963, gnl|tetNig1|chrUn_random (1011185-1011326) | |
| 802-963, gnl|xenTro1|scaffold_169 (1799152-1798981) | |
| 802-963, gnl|xenTro1|scaffold_169 (1799156-1799002) | |
| 1250-1500, gnl|bosTau2|chr17 (45290771-45291014) | |
| 1250-1500, gnl|Hg17|chr22 (19386827-19386550) |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-126, gnl|bosTau2|chr17 (45285327-45285452) | |
| 1-126, gnl|canFam2|chr26 (33804768-33804613) | |
| 1-126, gnl|danRer3|chrUn (27770372-27770524) | |
| 1-126, gnl|dasNov1|scaffold_12671 (6808-6989) | |
| 1-126, gnl|fr1|chrUn (28686107-28686246) | |
| 1-126, gnl|galGal2|chr15 (124791-124618) | |
| 1-126, gnl|hg17|chr22 (18769048-18769221) | |
| 1-126, gnl|Hg17|chr22 (19397659-19397534) | |
| 1-126, gnl|loxAfr1|scaffold_12650 (29708-29534) | |
| 1-126, gnl|mm7|chr16 (16836359-16836530) | |
| 1-126, gnl|Mm7|chr16 (16836509-16836384) | |
| 1-126, gnl|monDom2|scaffold_214 (315172-315002) | |
| 1-126, gnl|oryCun1|scaffold_174951 (16614-16440) | |
| 1-126, gnl|panTro1|chr23 (20118140-20118313) | |
| 1-126, gnl|rheMac2|chr10 (65199650-65199479) | |
| 1-126, gnl|rn3|chr11 (85760916-85760745) | |
| 1-126, gnl|tetNig1|chr12 (3205799-3205647) | |
| 1-126, gnl|xenTro1|scaffold_169 (1791969-1791802) | |
| 339-451, gnl|bosTau2|chr17 (45287962-45288074) | |
| 339-451, gnl|Hg17|chr22 (19392234-19392122) | |
| 339-451, gnl|Mm7|chr16 (16833144-16833032) | |
| 539-682, gnl|bosTau2|chr17 (45288372-45288515) | |
| 539-682, gnl|canFam2|chr26 (33809443-33809292) | |
| 539-682, gnl|danRer3|chrUn (27764462-27764607) | |
| 539-682, gnl|echTel1|scaffold_321304 (3111-3260) | |
| 539-682, gnl|fr1|chrUn (28684751-28684900) | |
| 539-682, gnl|galGal2|chr15 (130033-129894) | |
| 539-682, gnl|hg17|chr22 (18762848-18762998) | |
| 539-682, gnl|Hg17|chr22 (19391469-19391327) | |
| 539-682, gnl|loxAfr1|scaffold_12650 (33327-33176) | |
| 539-682, gnl|mm7|chr16 (16832349-16832502) | |
| 539-682, gnl|Mm7|chr16 (16832499-16832349) | |
| 539-682, gnl|monDom2|scaffold_214 (318046-317891) | |
| 539-682, gnl|oryCun1|scaffold_174951 (21150-20993) | |
| 539-682, gnl|panTro1|chr23_random (3925966-3926116) | |
| 539-682, gnl|rheMac2|chr10 (65205327-65205176) | |
| 539-682, gnl|rn3|chr11 (85764866-85764710) | |
| 539-682, gnl|tetNig1|chr12 (3207401-3207253) | |
| 539-682, gnl|xenTro1|scaffold_169 (1798565-1798435) | |
| 802-963, gnl|bosTau2|chr17 (45288946-45289107) | |
| 802-963, gnl|canFam2|chr26 (33810618-33810445) | |
| 802-963, gnl|canFam2|chr26 (33810617-33810468) | |
| 802-963, gnl|danRer3|chrUn (27761528-27761701) | |
| 802-963, gnl|danRer3|chrUn (27761529-27761678) | |
| 802-963, gnl|echTel1|scaffold_321304 (2133-2305) | |
| 802-963, gnl|echTel1|scaffold_321304 (2132-2283) | |
| 802-963, gnl|fr1|chrUn (28684186-28684358) | |
| 802-963, gnl|fr1|chrUn (28684187-28684350) | |
| 802-963, gnl|galGal2|chr15 (131253-131080) | |
| 802-963, gnl|hg17|chr22 (18761068-18761240) | |
| 802-963, gnl|Hg17|chr22 (19389701-19389540) | |
| 802-963, gnl|hg17|chr6 (134464226-134464391) | |
| 802-963, gnl|loxAfr1|scaffold_12650 (34278-34105) | |
| 802-963, gnl|loxAfr1|scaffold_12650 (34279-34128) | |
| 802-963, gnl|mm7|chr16 (16831579-16831752) | |
| 802-963, gnl|mm7|chr16 (16831578-16831729) | |
| 802-963, gnl|Mm7|chr16 (16831742-16831581) | |
| 802-963, gnl|monDom2|scaffold_214 (322541-322368) | |
| 802-963, gnl|monDom2|scaffold_214 (322542-322391) | |
| 802-963, gnl|oryCun1|scaffold_174951 (22146-21973) | |
| 802-963, gnl|oryCun1|scaffold_174951 (22147-21996) | |
| 802-963, gnl|panTro1|chr23 (18748138-18748310) | |
| 802-963, gnl|panTro1|chr5 (137106447-137106612) | |
| 802-963, gnl|rheMac2|chr4 (129756381-129756230) | |
| 802-963, gnl|rheMac2|chr4 (129756386-129756222) | |
| 802-963, gnl|rn3|chr11 (85765614-85765441) | |
| 802-963, gnl|rn3|chr11 (85765619-85765464) | |
| 802-963, gnl|tetNig1|chr12 (3207942-3207771) | |
| 802-963, gnl|tetNig1|chrUn_random (1011185-1011326) | |
| 802-963, gnl|xenTro1|scaffold_169 (1799152-1798981) | |
| 802-963, gnl|xenTro1|scaffold_169 (1799156-1799002) | |
| 1250-1500, gnl|bosTau2|chr17 (45290771-45291014) | |
| 1250-1500, gnl|Hg17|chr22 (19386827-19386550) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| elu (0.770713) | |
| amn (0.417711) | |
| fce (0.271592) | |
| eru (0.240096) | |
| nep (0.183925) | |
| eye (0.170503) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| pla (0.133672) | |
| cov (0.132153) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jej (0.0989218) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.770713) | |
| amn (0.417711) | |
| fce (0.271592) | |
| eru (0.240096) | |
| nep (0.183925) | |
| eye (0.170503) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| pla (0.133672) | |
| cov (0.132153) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jej (0.0989218) |