Non-Coding RNA Search

Ss1.1-reru01c_e22.5

Sequence:


               
               AGAACGAGGAAATCCAGAGGAGCATGAGCGAGCTGACCATGCAGAAGTCCCGTCTTCAGA
CGGAGGCCGGTGAGCTGAGTCGTCAACTCGAAGAGAAAGAGAGCACAGTATCACAGCTTT
CCAGAAGCAAGCAAGCGTTTACCCAGCAAATAGAAGAGCTCAAGAGGCAGCTGGAGGAGG
AGAGCAAGGCCAAGAACGCCCTGGCCCACGCTCTGCAGTCCGCCCGCCACGACTGCGACC
TGCTGCGGGAACAGTATGAGGAGGAGCAGGAAGCCAAGGCCGAGCTGCAGAGGGCGCTGT
CCAAGGCCAACAGCGAGGTTGCCCAGTGGAGGACCAAGTACGAGACGGACGCCATCCAGC
GCACCGAGGAGCTGGAGGAGGCCAAGAAAAAGCTTGCTCAGCGCCTTCAGGATTCCGAGG
AGCAGGTGGAGGCAGTGAACGCCAAGTGTGCCTCCCTGGAGAAGACCAAGCAGAGGCTGC
AAGCGGAGGTGGAGGACCTGATGGTGGACGTGGACAGAGCCAACTCTCTGGCTGCTGCGC
TGGACAAGAAGCAGAGAAACTTCGACAAGGTGCTCGCCGAGTGGAAAACAAAGTGTGAGG
AGAGCCAGGCAGAGCTGGAGGCAGCTCTGAAGGAATCCCGCTCCTTGAGCACCGAGCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAACGAGGAAATCCAGAGGAGCATGAGCGAGCTGACCATGCAGAAGTCCCGTCTTCAGA
CGGAGGCCGGTGAGCTGAGTCGTCAACTCGAAGAGAAAGAGAGCACAGTATCACAGCTTT
CCAGAAGCAAGCAAGCGTTTACCCAGCAAATAGAAGAGCTCAAGAGGCAGCTGGAGGAGG
AGAGCAAGGCCAAGAACGCCCTGGCCCACGCTCTGCAGTCCGCCCGCCACGACTGCGACC
TGCTGCGGGAACAGTATGAGGAGGAGCAGGAAGCCAAGGCCGAGCTGCAGAGGGCGCTGT
CCAAGGCCAACAGCGAGGTTGCCCAGTGGAGGACCAAGTACGAGACGGACGCCATCCAGC
GCACCGAGGAGCTGGAGGAGGCCAAGAAAAAGCTTGCTCAGCGCCTTCAGGATTCCGAGG
AGCAGGTGGAGGCAGTGAACGCCAAGTGTGCCTCCCTGGAGAAGACCAAGCAGAGGCTGC
AAGCGGAGGTGGAGGACCTGATGGTGGACGTGGACAGAGCCAACTCTCTGGCTGCTGCGC
TGGACAAGAAGCAGAGAAACTTCGACAAGGTGCTCGCCGAGTGGAAAACAAAGTGTGAGG
AGAGCCAGGCAGAGCTGGAGGCAGCTCTGAAGGAATCCCGCTCCTTGAGCACCGAGCTCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               386-504, + strand, RNAz p=0.763589

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               386-504, + strand, RNAz p=0.763589

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               386-573, gnl|bosTau2|chr19 (22706962-22706775)
               

               
               386-573, gnl|Hg17|chr17 (10479065-10478878)
               

               
               386-573, gnl|Mm7|chr11 (67178441-67178628)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               386-573, gnl|bosTau2|chr19 (22706962-22706775)
               

               
               386-573, gnl|Hg17|chr17 (10479065-10478878)
               

               
               386-573, gnl|Mm7|chr11 (67178441-67178628)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eru (0.360144)
               

               
               ese (0.253004)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.360144)
               

               
               ese (0.253004)

	386-573, gnl\|bosTau2\|chr19 (22706962-22706775)
	386-573, gnl\|Hg17\|chr17 (10479065-10478878)
	386-573, gnl\|Mm7\|chr11 (67178441-67178628)