Ss1.1-reru01c_h6.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCGCCGAGAAGGGCCTGTACAACGAGCACACGGTGGACCGGGCCCCGCTGCGCAACAAG TACTTCTTCGGCGAGGGCTACACGTACGGCGCCCAGCTGCAGAAGCGCGGGCCCGGCCAG GAGCGCCTCTACCCGCCGGGCGACGTGGACGAGATCCCCGAGTGGGTGCACCAGCTGGTG ATCCAGAAGCTGGTGGAGCACCGCGTCATCCCCGAGGGCTTCGTCAACAGCGCCGTCATC AACGACTACCAGCCCGGCGGCTGCATCGTGTCTCACGTGGACCCCATCCACATCTTCGAG CGCCCCATCGTGTCCGTGTCCTTCTTCAGCGACTCCGCGCTCTGCTTCGGCTGCAAGTTC CAGTTCAAGCCTATCCGGGTGTCGGAACCCGTGCTTTCCCTGCCTGTGCGCAGGGGGAGC GTGACTGTGCTCAGTGGATATGCTGCTGATGAAATCACTCACTGCATACGGCCTCAGGAC ATCAAGGAGCGCAGAGCTGTCATCATCCTCAGGAAGACAAGGTTAGATGCGCCTCGGTTG GAAACCAAGTCCCTGAGCAGCTCCGTGGTAGCCCCCAGCTACGCGTCGGATCGTCTGTCG GGAAACAGCAGGGACCCCGCGCTGAAACCCAAGCGGTCCCACCGCAAGGCAGACCCTGAT GCTGCCCACAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCGCCGAGAAGGGCCTGTACAACGAGCACACGGTGGACCGGGCCCCGCTGCGCAACAAG TACTTCTTCGGCGAGGGCTACACGTACGGCGCCCAGCTGCAGAAGCGCGGGCCCGGCCAG GAGCGCCTCTACCCGCCGGGCGACGTGGACGAGATCCCCGAGTGGGTGCACCAGCTGGTG ATCCAGAAGCTGGTGGAGCACCGCGTCATCCCCGAGGGCTTCGTCAACAGCGCCGTCATC AACGACTACCAGCCCGGCGGCTGCATCGTGTCTCACGTGGACCCCATCCACATCTTCGAG CGCCCCATCGTGTCCGTGTCCTTCTTCAGCGACTCCGCGCTCTGCTTCGGCTGCAAGTTC CAGTTCAAGCCTATCCGGGTGTCGGAACCCGTGCTTTCCCTGCCTGTGCGCAGGGGGAGC GTGACTGTGCTCAGTGGATATGCTGCTGATGAAATCACTCACTGCATACGGCCTCAGGAC ATCAAGGAGCGCAGAGCTGTCATCATCCTCAGGAAGACAAGGTTAGATGCGCCTCGGTTG GAAACCAAGTCCCTGAGCAGCTCCGTGGTAGCCCCCAGCTACGCGTCGGATCGTCTGTCG GGAAACAGCAGGGACCCCGCGCTGAAACCCAAGCGGTCCCACCGCAAGGCAGACCCTGAT GCTGCCCACAGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 545-672, - strand, RNAz p=0.995614 | |
| 560-672, - strand, RNAz p=0.762484 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 545-672, - strand, RNAz p=0.995614 | |
| 560-672, - strand, RNAz p=0.762484 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 1-434, gnl|bosTau2|chr19 (26574949-26575382) | |
| 1-434, gnl|Hg17|chr17 (18028619-18029052) | |
| 1-434, gnl|Mm7|chr11 (60620320-60620753) | |
| 506-672, gnl|bosTau2|chr19 (26589264-26589430) | |
| 506-672, gnl|canFam2|chr5 (44343887-44343702) | |
| 506-672, gnl|danRer3|chr1 (3466075-3465929) | |
| 506-672, gnl|echTel1|scaffold_310867 (9351-9166) | |
| 506-672, gnl|fr1|chrUn (239335436-239335567) | |
| 506-672, gnl|galGal2|chr14 (7110985-7111175) | |
| 506-672, gnl|hg17|chr17 (18050832-18051017) | |
| 506-672, gnl|Hg17|chr17 (18050844-18051010) | |
| 506-672, gnl|loxAfr1|scaffold_8137 (67156-67341) | |
| 506-672, gnl|mm7|chr11 (60635250-60635434) | |
| 506-672, gnl|Mm7|chr11 (60635262-60635428) | |
| 506-672, gnl|monDom2|scaffold_55 (12271926-12271747) | |
| 506-672, gnl|oryCun1|scaffold_207701 (38532-38713) | |
| 506-672, gnl|panTro1|chr19_random (6732751-6732566) | |
| 506-672, gnl|rheMac2|chr16 (18130967-18131152) | |
| 506-672, gnl|rn3|chr10 (46844989-46845173) | |
| 506-672, gnl|tetNig1|chr18 (8642809-8642940) | |
| 506-672, gnl|xenTro1|scaffold_142 (1175791-1175625) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-434, gnl|bosTau2|chr19 (26574949-26575382) | |
| 1-434, gnl|Hg17|chr17 (18028619-18029052) | |
| 1-434, gnl|Mm7|chr11 (60620320-60620753) | |
| 506-672, gnl|bosTau2|chr19 (26589264-26589430) | |
| 506-672, gnl|canFam2|chr5 (44343887-44343702) | |
| 506-672, gnl|danRer3|chr1 (3466075-3465929) | |
| 506-672, gnl|echTel1|scaffold_310867 (9351-9166) | |
| 506-672, gnl|fr1|chrUn (239335436-239335567) | |
| 506-672, gnl|galGal2|chr14 (7110985-7111175) | |
| 506-672, gnl|hg17|chr17 (18050832-18051017) | |
| 506-672, gnl|Hg17|chr17 (18050844-18051010) | |
| 506-672, gnl|loxAfr1|scaffold_8137 (67156-67341) | |
| 506-672, gnl|mm7|chr11 (60635250-60635434) | |
| 506-672, gnl|Mm7|chr11 (60635262-60635428) | |
| 506-672, gnl|monDom2|scaffold_55 (12271926-12271747) | |
| 506-672, gnl|oryCun1|scaffold_207701 (38532-38713) | |
| 506-672, gnl|panTro1|chr19_random (6732751-6732566) | |
| 506-672, gnl|rheMac2|chr16 (18130967-18131152) | |
| 506-672, gnl|rn3|chr10 (46844989-46845173) | |
| 506-672, gnl|tetNig1|chr18 (8642809-8642940) | |
| 506-672, gnl|xenTro1|scaffold_142 (1175791-1175625) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| ece (0.229305) | |
| pla (0.133672) | |
| eru (0.120048) | |
| ebs (0.118301) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| pla (0.133672) | |
| eru (0.120048) | |
| ebs (0.118301) |