Non-Coding RNA Search

Ss1.1-reru01c_i12.5

Sequence:


               
               CTGTGGGCCTGTTTGTGAACCGCTTTGGCCGGCGGAATTCCATGCTGATGATGAACCTGC
TGGCCTTCATATCTGCTGTGCTCATGGGCTTCTCCAAACTGGGCAAATCCTTTGAGATGC
TGATCCTGGGTCGCTTCATCATCGGTGTGTACTGCGGCCTGACCACGGGCTTCGTGCCCA
TGTATGTGGGGGAGGTGTCCCCGACGGCCCTTCGAGGGGCCCTGGGCACCCTGCACCAGC
TGGGCATCGTCGTCGGCATCCTCATCGCCCAGGTATTTGGCCTGGACTCCATCATGGGCA
ACGAGGAGCTGTGGCCCCTGCTCCTGAGCGTCATCTTCATCCCGGCCCTGCTGCAGTGCG
TCCTGCTGCCCTTCTGCCCCGAGAGCCCCCGCTTCCTGCTCATCAACCGCAATGAGGAGA
ACCGGGCCAAGAGCGTGCTGAAGAAGCTGCGCGGAACGGCAGACGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTGGGCCTGTTTGTGAACCGCTTTGGCCGGCGGAATTCCATGCTGATGATGAACCTGC
TGGCCTTCATATCTGCTGTGCTCATGGGCTTCTCCAAACTGGGCAAATCCTTTGAGATGC
TGATCCTGGGTCGCTTCATCATCGGTGTGTACTGCGGCCTGACCACGGGCTTCGTGCCCA
TGTATGTGGGGGAGGTGTCCCCGACGGCCCTTCGAGGGGCCCTGGGCACCCTGCACCAGC
TGGGCATCGTCGTCGGCATCCTCATCGCCCAGGTATTTGGCCTGGACTCCATCATGGGCA
ACGAGGAGCTGTGGCCCCTGCTCCTGAGCGTCATCTTCATCCCGGCCCTGCTGCAGTGCG
TCCTGCTGCCCTTCTGCCCCGAGAGCCCCCGCTTCCTGCTCATCAACCGCAATGAGGAGA
ACCGGGCCAAGAGCGTGCTGAAGAAGCTGCGCGGAACGGCAGACGTGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55731534|emb|CAH92477.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55731534|emb|CAH92477.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               31-275, + strand, RNAz p=0.967785

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               31-275, + strand, RNAz p=0.967785

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               31-275, gnl|bosTau2|chr11 (43026385-43026141)
               

               
               31-275, gnl|Hg17|chr1 (43065631-43065387)
               

               
               31-275, gnl|Mm7|chr4 (118508881-118509125)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               31-275, gnl|bosTau2|chr11 (43026385-43026141)
               

               
               31-275, gnl|Hg17|chr1 (43065631-43065387)
               

               
               31-275, gnl|Mm7|chr4 (118508881-118509125)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

	31-275, gnl\|bosTau2\|chr11 (43026385-43026141)
	31-275, gnl\|Hg17\|chr1 (43065631-43065387)
	31-275, gnl\|Mm7\|chr4 (118508881-118509125)