Non-Coding RNA Search

Ss1.1-reru01c_j16.5

Sequence:


               
               ATTCTAGTAATGGGGGGCTTCCAACCTTTTATTTCCAGATGGTTAACCCACTGATATTGT
TATAGGTGACCCCATCTGATGAAAACCATTCTAAAACATCAATTAATTCAGTTAAAGACC
ATGGTCCCTCTGTCCCCAAGACAGATCCTATCAAGAGAGGGAAAAGTCTCTTCTCTGGAC
ACAAATTAAACTAACATGAAAAAGATAAAAAATCAGTCTCTGTCAAGCTAGGCAGGAGGG
AGTGTCAGGTTTGTAAAACCAAACCTGGTACCTACCTTCACCGTCCTTCCAAACAGTAGA
AACCATTCCCTCTCCTCTTATCCCTCTGTAATCTAATTCATTTTTAAAAGGACATCTCGC
CTAAATCCCACCTCCAATAAATATCCAGTCTAAATTATTCTCCACCCAATTATTAAACTT
TTTCACAAGCTCTGGGGGGAAGATTTACCCTGAGACAAATAATAAACAGAATGGGGATTC
TGGAAAGATAAAAAGGTACAAGGCATAGTGGTCCCAGCATCAGAAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCTAGTAATGGGGGGCTTCCAACCTTTTATTTCCAGATGGTTAACCCACTGATATTGT
TATAGGTGACCCCATCTGATGAAAACCATTCTAAAACATCAATTAATTCAGTTAAAGACC
ATGGTCCCTCTGTCCCCAAGACAGATCCTATCAAGAGAGGGAAAAGTCTCTTCTCTGGAC
ACAAATTAAACTAACATGAAAAAGATAAAAAATCAGTCTCTGTCAAGCTAGGCAGGAGGG
AGTGTCAGGTTTGTAAAACCAAACCTGGTACCTACCTTCACCGTCCTTCCAAACAGTAGA
AACCATTCCCTCTCCTCTTATCCCTCTGTAATCTAATTCATTTTTAAAAGGACATCTCGC
CTAAATCCCACCTCCAATAAATATCCAGTCTAAATTATTCTCCACCCAATTATTAAACTT
TTTCACAAGCTCTGGGGGGAAGATTTACCCTGAGACAAATAATAAACAGAATGGGGATTC
TGGAAAGATAAAAAGGTACAAGGCATAGTGGTCCCAGCATCAGAAATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               129-266, - strand, RNAz p=0.981282

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               129-266, - strand, RNAz p=0.981282

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_020834, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_020834, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               129-528, gnl|bosTau2|chr10 (13831321-13830924)
               

               
               129-528, gnl|Hg17|chr14 (22813271-22813776)
               

               
               129-528, gnl|Mm7|chr14 (49722627-49723114)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               129-528, gnl|bosTau2|chr10 (13831321-13830924)
               

               
               129-528, gnl|Hg17|chr14 (22813271-22813776)
               

               
               129-528, gnl|Mm7|chr14 (49722627-49723114)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cov (0.132153)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

	129-528, gnl\|bosTau2\|chr10 (13831321-13830924)
	129-528, gnl\|Hg17\|chr14 (22813271-22813776)
	129-528, gnl\|Mm7\|chr14 (49722627-49723114)