Non-Coding RNA Search

Ss1.1-reru01c_j19.5

Sequence:


               
               TTCGGCTCGGGCAACAGCCGCATCTTCAGCTACATGGGCGAGCTTCAGCGGCGCAAGGAG
GCGCAGGTGCTGGGGAAGACAGGCCGGCGGTGAGCAAGGGGGGAGGCGAGGCTTTATGGG
GGGTAGCAGTGCAGTGTGTACATGGACTGCCCTGAAGCTGGCTTCTTCATGAAGACTTAC
CACGGGCCTGGAAGACACCTTGGCGTCCTGCCACCACAGTGTGCTGCTCAGAGGTGTGCT
AGTGAATTGCTAGGGCTGAACTCAGGAAAGCAGTGTGTCTGGTGAAAGGCTGGCAGTCTG
AGGGCTAGTAATGCAAAAGCCCTAATCTGCAAAGCCCTGACTGTGATCTAATGAGGCGGG
CTGCCTGGCTTCTGGAAACCTAGTTTCCTCCAAGCTAGTTTACCGAATGGCCAATCTGCT
AAATGGCCAATTTATTGTAACTGACAACAGTTCACTGTACCTGGGGTTTGCCTCATCCGA
GGTAGGGATTGGGAAGGGAAATAAAAAACATAATAAGGGAACGCATACCCATCCACGTAA
TTATACTGTGCATTCTAAACAGACTCACCTCTTAGATGTGAAGCCCAGCCTACCCTGACC
ATAGACTCTGCTGATCTGACAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCGGCTCGGGCAACAGCCGCATCTTCAGCTACATGGGCGAGCTTCAGCGGCGCAAGGAG
GCGCAGGTGCTGGGGAAGACAGGCCGGCGGTGAGCAAGGGGGGAGGCGAGGCTTTATGGG
GGGTAGCAGTGCAGTGTGTACATGGACTGCCCTGAAGCTGGCTTCTTCATGAAGACTTAC
CACGGGCCTGGAAGACACCTTGGCGTCCTGCCACCACAGTGTGCTGCTCAGAGGTGTGCT
AGTGAATTGCTAGGGCTGAACTCAGGAAAGCAGTGTGTCTGGTGAAAGGCTGGCAGTCTG
AGGGCTAGTAATGCAAAAGCCCTAATCTGCAAAGCCCTGACTGTGATCTAATGAGGCGGG
CTGCCTGGCTTCTGGAAACCTAGTTTCCTCCAAGCTAGTTTACCGAATGGCCAATCTGCT
AAATGGCCAATTTATTGTAACTGACAACAGTTCACTGTACCTGGGGTTTGCCTCATCCGA
GGTAGGGATTGGGAAGGGAAATAAAAAACATAATAAGGGAACGCATACCCATCCACGTAA
TTATACTGTGCATTCTAAACAGACTCACCTCTTAGATGTGAAGCCCAGCCTACCCTGACC
ATAGACTCTGCTGATCTGACAAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               342-454, - strand, RNAz p=0.917566

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               342-454, - strand, RNAz p=0.917566

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               11-514, gnl|bosTau2|chr11 (7891330-7891848)
               

               
               11-514, gnl|Hg17|chr2 (74571327-74570809)
               

               
               11-514, gnl|Mm7|chr6 (83171486-83172042)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-514, gnl|bosTau2|chr11 (7891330-7891848)
               

               
               11-514, gnl|Hg17|chr2 (74571327-74570809)
               

               
               11-514, gnl|Mm7|chr6 (83171486-83172042)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	11-514, gnl\|bosTau2\|chr11 (7891330-7891848)
	11-514, gnl\|Hg17\|chr2 (74571327-74570809)
	11-514, gnl\|Mm7\|chr6 (83171486-83172042)