Non-Coding RNA Search

Ss1.1-reru01c_m12.5

Sequence:


               
               AAGTCAAGTAAGAAACTGGCCTCTGAGCTAAGTTTTGATTTTCGCATTGAATCTGTAGTA
TGCCTTCAAGACAGTGTGTTGGCTTTCTGGAAACATGGAATGCAGGGTAAAAGCTTCAAA
TCGGATGAGGTTACCCAAGAGATTTCAGATGAAACAAGAGTTTTCCGCTTATTAGGATCA
GACAGGGTTGTCGTTTTGGAAAGCAGGCCAACAGAAAATCCTACTGCACACAGCAATCTT
TACATCTTGGCTGGACATGAAAATAGTTACTAAGCAACAGAAACTGGTCTCAAATGACAG
GAAAATCAATACACACCCCATTGAAAGCAAAGATGTCTTAAGGAAATTCAGTACAAACTA
CAGTATCATTTGCTTTAATTTGTTATGGGTTTTATCTCAAATGATCTGTACTTTACAATA
TTTTCTGTAGCTGGAAACAGCTAGTCTATCTCTTGCCACTGTGTGGTGGTTATATCAAGT
TTGCTTAATAAAAGCTATGAGACAAATAGTCCTCTAGTTCTAGGAAACACAGTCTTTTTA
AAAAAAAAAATAATGTTTGTAACAAGGGTGCCATGATATTTTTAGGTAGCAACTCGTGAT
TATCTTCAGAGAGAGGAATTTAGTGACAGTTTTCTCATTTTATACCATGTTTTATTCCTT
CTTAATGAACATAATTTGATAAAGAAATTATCAGATAAGCCTTTCACTTTTACATTGGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGTCAAGTAAGAAACTGGCCTCTGAGCTAAGTTTTGATTTTCGCATTGAATCTGTAGTA
TGCCTTCAAGACAGTGTGTTGGCTTTCTGGAAACATGGAATGCAGGGTAAAAGCTTCAAA
TCGGATGAGGTTACCCAAGAGATTTCAGATGAAACAAGAGTTTTCCGCTTATTAGGATCA
GACAGGGTTGTCGTTTTGGAAAGCAGGCCAACAGAAAATCCTACTGCACACAGCAATCTT
TACATCTTGGCTGGACATGAAAATAGTTACTAAGCAACAGAAACTGGTCTCAAATGACAG
GAAAATCAATACACACCCCATTGAAAGCAAAGATGTCTTAAGGAAATTCAGTACAAACTA
CAGTATCATTTGCTTTAATTTGTTATGGGTTTTATCTCAAATGATCTGTACTTTACAATA
TTTTCTGTAGCTGGAAACAGCTAGTCTATCTCTTGCCACTGTGTGGTGGTTATATCAAGT
TTGCTTAATAAAAGCTATGAGACAAATAGTCCTCTAGTTCTAGGAAACACAGTCTTTTTA
AAAAAAAAAATAATGTTTGTAACAAGGGTGCCATGATATTTTTAGGTAGCAACTCGTGAT
TATCTTCAGAGAGAGGAATTTAGTGACAGTTTTCTCATTTTATACCATGTTTTATTCCTT
CTTAATGAACATAATTTGATAAAGAAATTATCAGATAAGCCTTTCACTTTTACATTGGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8BV99_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8BV99_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               381-569, + strand, RNAz p=0.986194

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               381-569, + strand, RNAz p=0.986194

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               416-539, BP289312 Sugano cDNA library, lung fibroblast Homo sapiens cDNA 
(dbj|BP289312.1|), blast E-value=0, identity=98.39% 
               

               
               416-539, BP376133 Sugano cDNA library, uterus Homo sapiens cDNA clone 
(dbj|BP376133.1|), blast E-value=0, identity=98.39% 
               

               
               416-539, DA569637 HEMBA1 Homo sapiens cDNA clone HEMBA1003215 5', mRNA 
(dbj|DA569637.1|), blast E-value=0, identity=98.39% 
               

               
               416-539, BX325618 Homo sapiens NEUROBLASTOMA COT 25-NORMALIZED Homo sapiens 
(emb|BX325618.2|), blast E-value=0, identity=98.39% 
               

               
               416-539, BX328947 Homo sapiens NEUROBLASTOMA COT 25-NORMALIZED Homo sapiens 
(emb|BX328947.2|), blast E-value=0, identity=98.39% 
               

               
               416-539, 17000582991458 GRN_PREHEP Homo sapiens cDNA 5', mRNA sequence 
(gb|CN343358.1|), blast E-value=0, identity=98.39%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               416-539, BP289312 Sugano cDNA library, lung fibroblast Homo sapiens cDNA 
(dbj|BP289312.1|), blast E-value=0, identity=98.39% 
               

               
               416-539, BP376133 Sugano cDNA library, uterus Homo sapiens cDNA clone 
(dbj|BP376133.1|), blast E-value=0, identity=98.39% 
               

               
               416-539, DA569637 HEMBA1 Homo sapiens cDNA clone HEMBA1003215 5', mRNA 
(dbj|DA569637.1|), blast E-value=0, identity=98.39% 
               

               
               416-539, BX325618 Homo sapiens NEUROBLASTOMA COT 25-NORMALIZED Homo sapiens 
(emb|BX325618.2|), blast E-value=0, identity=98.39% 
               

               
               416-539, BX328947 Homo sapiens NEUROBLASTOMA COT 25-NORMALIZED Homo sapiens 
(emb|BX328947.2|), blast E-value=0, identity=98.39% 
               

               
               416-539, 17000582991458 GRN_PREHEP Homo sapiens cDNA 5', mRNA sequence 
(gb|CN343358.1|), blast E-value=0, identity=98.39%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_198794, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_198794, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               183-720, gnl|bosTau2|chr10 (28818000-28817456)
               

               
               183-720, gnl|Hg17|chr14 (49956577-49956054)
               

               
               183-720, gnl|Mm7|chr12 (67746346-67745810)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               183-720, gnl|bosTau2|chr10 (28818000-28817456)
               

               
               183-720, gnl|Hg17|chr14 (49956577-49956054)
               

               
               183-720, gnl|Mm7|chr12 (67746346-67745810)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fcc (0.197785)
               

               
               eru (0.120048)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               eru (0.120048)

	416-539, BP289312 Sugano cDNA library, lung fibroblast Homo sapiens cDNA (dbj\|BP289312.1\|), blast E-value=0, identity=98.39%
	416-539, BP376133 Sugano cDNA library, uterus Homo sapiens cDNA clone (dbj\|BP376133.1\|), blast E-value=0, identity=98.39%
	416-539, DA569637 HEMBA1 Homo sapiens cDNA clone HEMBA1003215 5', mRNA (dbj\|DA569637.1\|), blast E-value=0, identity=98.39%
	416-539, BX325618 Homo sapiens NEUROBLASTOMA COT 25-NORMALIZED Homo sapiens (emb\|BX325618.2\|), blast E-value=0, identity=98.39%
	416-539, BX328947 Homo sapiens NEUROBLASTOMA COT 25-NORMALIZED Homo sapiens (emb\|BX328947.2\|), blast E-value=0, identity=98.39%
	416-539, 17000582991458 GRN_PREHEP Homo sapiens cDNA 5', mRNA sequence (gb\|CN343358.1\|), blast E-value=0, identity=98.39%

	183-720, gnl\|bosTau2\|chr10 (28818000-28817456)
	183-720, gnl\|Hg17\|chr14 (49956577-49956054)
	183-720, gnl\|Mm7\|chr12 (67746346-67745810)