Non-Coding RNA Search

Ss1.1-reru01c_n14.5.5

Sequence:


               
               TCCCCCCTCCACACACTCTCCATCTCCAGGGGAACTTGGTGCTACATGCTGGTGCTCTCA
TCTTCCTGCGGGGAGGGAGGAGGGAAGGGCAGCCCCTTAGGGAACCCCCTCCCTGGGGCT
CCTCTGAAGATGGTGCAGACACTTCCTGGGCAGTCTCACCTCCCCCTGCCCACCAGGACC
CACTTCTGGCTACGGTCTAGTTGGTACCCACACATCGAAACCCTCAAGCTGGATTCGGTC
ACTCCGTCTCTTGGCCCTCCTGGCCCCCCTCCCCTAGCAGTCGCTATTCCCCATGCCTGG
GGCATCTTCACGTCGAAAGACCGCCTCCCCCCGCATTGGGATTAGCCCCCTTGCTCTTGT
GGAATTCATCCGCCCATCTGTCCAGCCAGCCAGCCATCCGTCCTTATCCTCAGCCCCATT
TGGCCGCCCGGCACCACTAGCTGGCGGGGCACCCCACCATCAGCTTGGTTTACCCGTCAT
GGCAGCCTGTGCCCTGCCTCTGCCCCACCACACACACCCCTACGATGGGGCCCCAGGCCC
AGGGTGTGAGGGGCTGTGCCAGCTGGGGCAGCAGGAATCTCCCCCCAACCTGGGTCTCCC
CCCACGCAGTACTGTATCCCCATCCCTCCCTCGAGCCACTGTACTTCAGAGCATTTTCCC
CCCGCCCCGCCCATCTCTGTGTCTCGCTGTGATAGATCAATAAATATTTTATTTTTTGTC
CTGGAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCCCCTCCACACACTCTCCATCTCCAGGGGAACTTGGTGCTACATGCTGGTGCTCTCA
TCTTCCTGCGGGGAGGGAGGAGGGAAGGGCAGCCCCTTAGGGAACCCCCTCCCTGGGGCT
CCTCTGAAGATGGTGCAGACACTTCCTGGGCAGTCTCACCTCCCCCTGCCCACCAGGACC
CACTTCTGGCTACGGTCTAGTTGGTACCCACACATCGAAACCCTCAAGCTGGATTCGGTC
ACTCCGTCTCTTGGCCCTCCTGGCCCCCCTCCCCTAGCAGTCGCTATTCCCCATGCCTGG
GGCATCTTCACGTCGAAAGACCGCCTCCCCCCGCATTGGGATTAGCCCCCTTGCTCTTGT
GGAATTCATCCGCCCATCTGTCCAGCCAGCCAGCCATCCGTCCTTATCCTCAGCCCCATT
TGGCCGCCCGGCACCACTAGCTGGCGGGGCACCCCACCATCAGCTTGGTTTACCCGTCAT
GGCAGCCTGTGCCCTGCCTCTGCCCCACCACACACACCCCTACGATGGGGCCCCAGGCCC
AGGGTGTGAGGGGCTGTGCCAGCTGGGGCAGCAGGAATCTCCCCCCAACCTGGGTCTCCC
CCCACGCAGTACTGTATCCCCATCCCTCCCTCGAGCCACTGTACTTCAGAGCATTTTCCC
CCCGCCCCGCCCATCTCTGTGTCTCGCTGTGATAGATCAATAAATATTTTATTTTTTGTC
CTGGAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               3-195, - strand, RNAz p=0.760016
               

               
               235-386, - strand, RNAz p=0.986769
               

               
               427-621, - strand, RNAz p=0.992549

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-195, - strand, RNAz p=0.760016
               

               
               235-386, - strand, RNAz p=0.986769
               

               
               427-621, - strand, RNAz p=0.992549

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-725, gnl|bosTau2|chr25 (29157535-29156829)
               

               
               3-725, gnl|Hg17|chr7 (72927944-72928659)
               

               
               3-725, gnl|Mm7|chr5 (133674807-133674118)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-725, gnl|bosTau2|chr25 (29157535-29156829)
               

               
               3-725, gnl|Hg17|chr7 (72927944-72928659)
               

               
               3-725, gnl|Mm7|chr5 (133674807-133674118)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               nep (1.83925)
               

               
               nlu (1.72513)
               

               
               jca (1.36752)
               

               
               eru (0.60024)
               

               
               elu (0.385356)
               

               
               eye (0.341006)
               

               
               cga (0.279096)
               

               
               nca (0.273748)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               nmm (0.265604)
               

               
               cly (0.241284)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               ton (0.1755)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               med (0.116252)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (1.83925)
               

               
               nlu (1.72513)
               

               
               jca (1.36752)
               

               
               eru (0.60024)
               

               
               elu (0.385356)
               

               
               eye (0.341006)
               

               
               cga (0.279096)
               

               
               nca (0.273748)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               nmm (0.265604)
               

               
               cly (0.241284)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               ton (0.1755)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               med (0.116252)

	3-195, - strand, RNAz p=0.760016
	235-386, - strand, RNAz p=0.986769
	427-621, - strand, RNAz p=0.992549

	3-725, gnl\|bosTau2\|chr25 (29157535-29156829)
	3-725, gnl\|Hg17\|chr7 (72927944-72928659)
	3-725, gnl\|Mm7\|chr5 (133674807-133674118)

	nep (1.83925)
	nlu (1.72513)
	jca (1.36752)
	eru (0.60024)
	elu (0.385356)
	eye (0.341006)
	cga (0.279096)
	nca (0.273748)
	che (0.272628)
	fce (0.271592)
	nmm (0.265604)
	cly (0.241284)
	fcc (0.197785)
	eje (0.197668)
	ton (0.1755)
	cag (0.151194)
	lnt (0.142308)
	ese (0.126502)
	bla (0.124347)
	med (0.116252)