Non-Coding RNA Search

Ss1.1-reru01c_n20.5

Sequence:


               
               TCCTGAACAAGAAAGAGAAAAGAGTGACGAGGCCCAGCTCCCATGCACACCCTCCACCAC
TGTCCTGCCATAGCTGGCTTTCCAGGGGCTTCCACCAGGAAGCAGTTAAGCGTCCCGCTC
CCTCCTTTTTCCTCTTTACTCCTTTGGTGTCAAAGATCTGTGGAAAAGAAACGGAATACT
CTTTATGCCCATTTCTAATTTCTAAATTTCCATGGAATCCTGACAAATACTGCACGTGGC
CCAGAGGCTGCCGGAAAATTGAGGGGAGATAAAACCTTAAGATTTTAAGATAAAAAAGGA
TCCCCCCTCAAATGGAAAGAACAAAAAAGCTGGTCTTCCATTTTGCCGCATTCCCTGTTC
ATGACAGCTACCAAACTGGAGACATTAATATTTCATTAACCAAAGAAGGTGGGTCCTCTG
ACCTCTACAATGGGAAGGACTCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTGAACAAGAAAGAGAAAAGAGTGACGAGGCCCAGCTCCCATGCACACCCTCCACCAC
TGTCCTGCCATAGCTGGCTTTCCAGGGGCTTCCACCAGGAAGCAGTTAAGCGTCCCGCTC
CCTCCTTTTTCCTCTTTACTCCTTTGGTGTCAAAGATCTGTGGAAAAGAAACGGAATACT
CTTTATGCCCATTTCTAATTTCTAAATTTCCATGGAATCCTGACAAATACTGCACGTGGC
CCAGAGGCTGCCGGAAAATTGAGGGGAGATAAAACCTTAAGATTTTAAGATAAAAAAGGA
TCCCCCCTCAAATGGAAAGAACAAAAAAGCTGGTCTTCCATTTTGCCGCATTCCCTGTTC
ATGACAGCTACCAAACTGGAGACATTAATATTTCATTAACCAAAGAAGGTGGGTCCTCTG
ACCTCTACAATGGGAAGGACTCAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               202-357, - strand, RNAz p=0.762312

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               202-357, - strand, RNAz p=0.762312

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-444, gnl|bosTau2|chr15 (13562080-13561630)
               

               
               1-444, gnl|canFam2|chr5 (19323971-19323400)
               

               
               1-444, gnl|dasNov1|scaffold_4916 (53759-54339)
               

               
               1-444, gnl|echTel1|scaffold_300516 (6265-6724)
               

               
               1-444, gnl|hg17|chr11 (116662395-116662986)
               

               
               1-444, gnl|Hg17|chr11 (116663162-116662715)
               

               
               1-444, gnl|loxAfr1|scaffold_7234 (55579-55033)
               

               
               1-444, gnl|mm7|chr9 (45821812-45821267)
               

               
               1-444, gnl|Mm7|chr9 (45820703-45821540)
               

               
               1-444, gnl|monDom2|scaffold_2 (122004289-122003691)
               

               
               1-444, gnl|oryCun1|scaffold_174906 (5801-6333)
               

               
               1-444, gnl|panTro1|chr9 (118664546-118665137)
               

               
               1-444, gnl|rheMac2|chr14 (115687525-115688107)
               

               
               1-444, gnl|rn3|chr8 (48852098-48851550)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-444, gnl|bosTau2|chr15 (13562080-13561630)
               

               
               1-444, gnl|canFam2|chr5 (19323971-19323400)
               

               
               1-444, gnl|dasNov1|scaffold_4916 (53759-54339)
               

               
               1-444, gnl|echTel1|scaffold_300516 (6265-6724)
               

               
               1-444, gnl|hg17|chr11 (116662395-116662986)
               

               
               1-444, gnl|Hg17|chr11 (116663162-116662715)
               

               
               1-444, gnl|loxAfr1|scaffold_7234 (55579-55033)
               

               
               1-444, gnl|mm7|chr9 (45821812-45821267)
               

               
               1-444, gnl|Mm7|chr9 (45820703-45821540)
               

               
               1-444, gnl|monDom2|scaffold_2 (122004289-122003691)
               

               
               1-444, gnl|oryCun1|scaffold_174906 (5801-6333)
               

               
               1-444, gnl|panTro1|chr9 (118664546-118665137)
               

               
               1-444, gnl|rheMac2|chr14 (115687525-115688107)
               

               
               1-444, gnl|rn3|chr8 (48852098-48851550)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cst (0.140036)
               

               
               eru (0.120048)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)
               

               
               eru (0.120048)

	1-444, gnl\|bosTau2\|chr15 (13562080-13561630)
	1-444, gnl\|canFam2\|chr5 (19323971-19323400)
	1-444, gnl\|dasNov1\|scaffold_4916 (53759-54339)
	1-444, gnl\|echTel1\|scaffold_300516 (6265-6724)
	1-444, gnl\|hg17\|chr11 (116662395-116662986)
	1-444, gnl\|Hg17\|chr11 (116663162-116662715)
	1-444, gnl\|loxAfr1\|scaffold_7234 (55579-55033)
	1-444, gnl\|mm7\|chr9 (45821812-45821267)
	1-444, gnl\|Mm7\|chr9 (45820703-45821540)
	1-444, gnl\|monDom2\|scaffold_2 (122004289-122003691)
	1-444, gnl\|oryCun1\|scaffold_174906 (5801-6333)
	1-444, gnl\|panTro1\|chr9 (118664546-118665137)
	1-444, gnl\|rheMac2\|chr14 (115687525-115688107)
	1-444, gnl\|rn3\|chr8 (48852098-48851550)