Non-Coding RNA Search

Ss1.1-reru02c_m5.5

Sequence:


               
               AAATCAAAGAAAATATGTTTACGAAAATGCTTTGCAATTTTCCTAAACACTGAATCTTCA
AACAACAACCATGGACTTATAGGTACTGTGAACTCGAAGAATTGGCTATATTCAGATTTA
TTGGGAGATAAATTAAGACATATTTGTATGGCATAAATAAGCTGATTCAGAAGTTACATT
TCTTAACTTTAGTTAGAGGAGAATATTTGTATCCTTTTGTTGCTATGCAACTGTTTAATG
GTGAAGATTCAAACCACAATTTTGTATATCATACGACAATCAATTGTTTTCCAAGAATAT
TTATTATTTTAAGTAAACACAATTTCAGTGAATCTGAGTTTTTCTAGGAGTCCCTTAAAG
GGAAATTAGCATTCCGTGAGCCAGTAAAATATCTACTCTGGAAAAACATTACTATGGGTA
AAAAATAAATTCCAGTTAGTTTTTTATAAAGAACTATAACATTTATTTTTAACATTTTAT
AATTACTGAAGTCCTTAAAGTGAGCAAACTAAATTTCAAAACCACTTATCATAATGTATT
TTATAATAGCACTGTGATACTACATAACACAGTCCCTTTTGTATTAAAATAGTATTTTTT
TTCACAGACTGAAGAGTATCTTCTGCTTTGTTGACCATGTTTTGTAAGATGACTTTATTT
TCAGATCTTTTCCCCTTTTTGCACAAAACTATGTTTATGGTTTGTATCACAGAAGTGAAA
ATATATCTCTGCATTTTTATATCTGGTCTGTTTCCTTGTTTGCTTTGTTTTTAACTCGAT
ATAGATTTTCTTCAAATATATAATGGCAATATTCAGATATCTCACCCTATCATATCTTTC
CTTATTTTCACTGCATGCATTTAATCACTGTATTACTTAATGTTTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATCAAAGAAAATATGTTTACGAAAATGCTTTGCAATTTTCCTAAACACTGAATCTTCA
AACAACAACCATGGACTTATAGGTACTGTGAACTCGAAGAATTGGCTATATTCAGATTTA
TTGGGAGATAAATTAAGACATATTTGTATGGCATAAATAAGCTGATTCAGAAGTTACATT
TCTTAACTTTAGTTAGAGGAGAATATTTGTATCCTTTTGTTGCTATGCAACTGTTTAATG
GTGAAGATTCAAACCACAATTTTGTATATCATACGACAATCAATTGTTTTCCAAGAATAT
TTATTATTTTAAGTAAACACAATTTCAGTGAATCTGAGTTTTTCTAGGAGTCCCTTAAAG
GGAAATTAGCATTCCGTGAGCCAGTAAAATATCTACTCTGGAAAAACATTACTATGGGTA
AAAAATAAATTCCAGTTAGTTTTTTATAAAGAACTATAACATTTATTTTTAACATTTTAT
AATTACTGAAGTCCTTAAAGTGAGCAAACTAAATTTCAAAACCACTTATCATAATGTATT
TTATAATAGCACTGTGATACTACATAACACAGTCCCTTTTGTATTAAAATAGTATTTTTT
TTCACAGACTGAAGAGTATCTTCTGCTTTGTTGACCATGTTTTGTAAGATGACTTTATTT
TCAGATCTTTTCCCCTTTTTGCACAAAACTATGTTTATGGTTTGTATCACAGAAGTGAAA
ATATATCTCTGCATTTTTATATCTGGTCTGTTTCCTTGTTTGCTTTGTTTTTAACTCGAT
ATAGATTTTCTTCAAATATATAATGGCAATATTCAGATATCTCACCCTATCATATCTTTC
CTTATTTTCACTGCATGCATTTAATCACTGTATTACTTAATGTTTGAT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-888, gnl|bosTau2|chr3 (54065344-54066216)
               

               
               1-888, gnl|Hg17|chr1 (64358148-64359044)
               

               
               1-888, gnl|Mm7|chr4 (99820214-99821082)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-888, gnl|bosTau2|chr3 (54065344-54066216)
               

               
               1-888, gnl|Hg17|chr1 (64358148-64359044)
               

               
               1-888, gnl|Mm7|chr4 (99820214-99821082)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               bfe (0.149858)
               

               
               eru (0.120048)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.149858)
               

               
               eru (0.120048)

	1-888, gnl\|bosTau2\|chr3 (54065344-54066216)
	1-888, gnl\|Hg17\|chr1 (64358148-64359044)
	1-888, gnl\|Mm7\|chr4 (99820214-99821082)