Ss1.1-reru03c_g8.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCTGTGTTAGCCTTCCCATCCTTGTATTGGGATGATGCTGTTGATCTGCAGCCTTCCTC AGTTAGCTCTTCCTATAACCACCTTTATCTCTTCCATTTGATCACCATGGCACACATGTT TCAGATACTTCTTACCATAGACACAGGCCTTCCCCTTGCACAGACTCAAGAAGAGAGTGA AGAGGCTCATTCTGCATCTTCTTTCTTGGCAGAAGTTTCTCAATATACAAATGGCTACGT TGGGTGTGGTATTCCTGGCTGGTATTTATGGGTCTCATTGAAGAATGGCATCATCCCTTA CCTTCGCTGTGCTGCATTGTTTTTCCATTATTTACTTGGAATAACTCCACCTGAAGATCT GTTTACCAATTCTGCAGAGAGCGAGTACAGTGCACTCTGTAGCTATTTATCTTTACCCAC AAATTTGTTTCTGCTTTTCCAGAAATATTGGGATACTATAAGGCCCCTCCTCCAGAGGTG GTGTGCAGACCCTGCCTTACTAAACTGTTTGAAGCAAAAAAGCACCATTGTCAGGTACCC TAGAAAAAGAAATAGCTTGATAGAACTTCCTGATGACTATAGCTGCCTCCTAAATCAAGC TTCTCATTTCAGGTGCCCACGGTCTTCAGATGATGAACGAAAGCACCCTGTCCTCTGTCT TTTCTGTGGAGCCATACTGTGTTCTCAGAACATTTGTTGCCAAGAAATCGTGAATGGGGA AGAGGTGGGGGCTTGCATTTTTCATGCACTTCACTGTGGAGCTGGAGTCTGCATTTTCCT GAAAATCAGAGAGTGTAGAGTGGTCCTGGTTGAAGGTAAGGCCCGAGGCTGTGCCTACCC AGCCCCCTATTTGGATGAATATGGAGAAACAGACCCTGGCCTGAAGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCTGTGTTAGCCTTCCCATCCTTGTATTGGGATGATGCTGTTGATCTGCAGCCTTCCTC AGTTAGCTCTTCCTATAACCACCTTTATCTCTTCCATTTGATCACCATGGCACACATGTT TCAGATACTTCTTACCATAGACACAGGCCTTCCCCTTGCACAGACTCAAGAAGAGAGTGA AGAGGCTCATTCTGCATCTTCTTTCTTGGCAGAAGTTTCTCAATATACAAATGGCTACGT TGGGTGTGGTATTCCTGGCTGGTATTTATGGGTCTCATTGAAGAATGGCATCATCCCTTA CCTTCGCTGTGCTGCATTGTTTTTCCATTATTTACTTGGAATAACTCCACCTGAAGATCT GTTTACCAATTCTGCAGAGAGCGAGTACAGTGCACTCTGTAGCTATTTATCTTTACCCAC AAATTTGTTTCTGCTTTTCCAGAAATATTGGGATACTATAAGGCCCCTCCTCCAGAGGTG GTGTGCAGACCCTGCCTTACTAAACTGTTTGAAGCAAAAAAGCACCATTGTCAGGTACCC TAGAAAAAGAAATAGCTTGATAGAACTTCCTGATGACTATAGCTGCCTCCTAAATCAAGC TTCTCATTTCAGGTGCCCACGGTCTTCAGATGATGAACGAAAGCACCCTGTCCTCTGTCT TTTCTGTGGAGCCATACTGTGTTCTCAGAACATTTGTTGCCAAGAAATCGTGAATGGGGA AGAGGTGGGGGCTTGCATTTTTCATGCACTTCACTGTGGAGCTGGAGTCTGCATTTTCCT GAAAATCAGAGAGTGTAGAGTGGTCCTGGTTGAAGGTAAGGCCCGAGGCTGTGCCTACCC AGCCCCCTATTTGGATGAATATGGAGAAACAGACCCTGGCCTGAAGAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 369-479, - strand, RNAz p=0.935455 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 369-479, - strand, RNAz p=0.935455 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 3-147, gnl|bosTau2|chr10 (25628935-25629079) | |
| 3-147, gnl|canFam2|chr30 (12886932-12887105) | |
| 3-147, gnl|danRer3|chr10 (16715944-16716108) | |
| 3-147, gnl|dasNov1|scaffold_74143 (38780-38953) | |
| 3-147, gnl|echTel1|scaffold_311415 (38689-38862) | |
| 3-147, gnl|fr1|chrUn (69996526-69996337) | |
| 3-147, gnl|galGal2|chr5 (23250916-23251089) | |
| 3-147, gnl|hg17|chr15 (41056193-41056366) | |
| 3-147, gnl|Hg17|chr15 (41056350-41056206) | |
| 3-147, gnl|loxAfr1|scaffold_21729 (26958-27131) | |
| 3-147, gnl|mm7|chr2 (120621866-120622039) | |
| 3-147, gnl|Mm7|chr2 (120622023-120621879) | |
| 3-147, gnl|monDom2|scaffold_53 (11352706-11352533) | |
| 3-147, gnl|oryCun1|scaffold_201040 (66513-66340) | |
| 3-147, gnl|panTro1|chr16 (41040248-41040421) | |
| 3-147, gnl|rheMac2|chr7 (21433212-21433385) | |
| 3-147, gnl|rn3|chr3 (107550086-107550259) | |
| 3-147, gnl|tetNig1|chr10 (5316050-5316221) | |
| 3-147, gnl|xenTro1|scaffold_799 (155720-155557) | |
| 234-368, gnl|bosTau2|chr10 (25635044-25635178) | |
| 234-368, gnl|Hg17|chr15 (41045777-41045643) | |
| 234-368, gnl|Mm7|chr2 (120616342-120616215) | |
| 369-479, gnl|bosTau2|chr10 (25636465-25636575) | |
| 369-479, gnl|canFam2|chr30 (12880162-12880312) | |
| 369-479, gnl|fr1|chrUn (69997150-69997001) | |
| 369-479, gnl|galGal2|chr5 (23247044-23247191) | |
| 369-479, gnl|hg17|chr15 (41043423-41043574) | |
| 369-479, gnl|Hg17|chr15 (41043533-41043423) | |
| 369-479, gnl|loxAfr1|scaffold_21729 (22837-22986) | |
| 369-479, gnl|mm7|chr2 (120613971-120614123) | |
| 369-479, gnl|Mm7|chr2 (120614081-120613971) | |
| 369-479, gnl|monDom2|scaffold_53 (11361072-11360921) | |
| 369-479, gnl|oryCun1|scaffold_212487 (39094-39245) | |
| 369-479, gnl|panTro1|chr16 (41027485-41027636) | |
| 369-479, gnl|rheMac2|chr7 (21420767-21420918) | |
| 369-479, gnl|rn3|chr3 (107541542-107541694) | |
| 369-479, gnl|tetNig1|chr10 (5315448-5315594) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-147, gnl|bosTau2|chr10 (25628935-25629079) | |
| 3-147, gnl|canFam2|chr30 (12886932-12887105) | |
| 3-147, gnl|danRer3|chr10 (16715944-16716108) | |
| 3-147, gnl|dasNov1|scaffold_74143 (38780-38953) | |
| 3-147, gnl|echTel1|scaffold_311415 (38689-38862) | |
| 3-147, gnl|fr1|chrUn (69996526-69996337) | |
| 3-147, gnl|galGal2|chr5 (23250916-23251089) | |
| 3-147, gnl|hg17|chr15 (41056193-41056366) | |
| 3-147, gnl|Hg17|chr15 (41056350-41056206) | |
| 3-147, gnl|loxAfr1|scaffold_21729 (26958-27131) | |
| 3-147, gnl|mm7|chr2 (120621866-120622039) | |
| 3-147, gnl|Mm7|chr2 (120622023-120621879) | |
| 3-147, gnl|monDom2|scaffold_53 (11352706-11352533) | |
| 3-147, gnl|oryCun1|scaffold_201040 (66513-66340) | |
| 3-147, gnl|panTro1|chr16 (41040248-41040421) | |
| 3-147, gnl|rheMac2|chr7 (21433212-21433385) | |
| 3-147, gnl|rn3|chr3 (107550086-107550259) | |
| 3-147, gnl|tetNig1|chr10 (5316050-5316221) | |
| 3-147, gnl|xenTro1|scaffold_799 (155720-155557) | |
| 234-368, gnl|bosTau2|chr10 (25635044-25635178) | |
| 234-368, gnl|Hg17|chr15 (41045777-41045643) | |
| 234-368, gnl|Mm7|chr2 (120616342-120616215) | |
| 369-479, gnl|bosTau2|chr10 (25636465-25636575) | |
| 369-479, gnl|canFam2|chr30 (12880162-12880312) | |
| 369-479, gnl|fr1|chrUn (69997150-69997001) | |
| 369-479, gnl|galGal2|chr5 (23247044-23247191) | |
| 369-479, gnl|hg17|chr15 (41043423-41043574) | |
| 369-479, gnl|Hg17|chr15 (41043533-41043423) | |
| 369-479, gnl|loxAfr1|scaffold_21729 (22837-22986) | |
| 369-479, gnl|mm7|chr2 (120613971-120614123) | |
| 369-479, gnl|Mm7|chr2 (120614081-120613971) | |
| 369-479, gnl|monDom2|scaffold_53 (11361072-11360921) | |
| 369-479, gnl|oryCun1|scaffold_212487 (39094-39245) | |
| 369-479, gnl|panTro1|chr16 (41027485-41027636) | |
| 369-479, gnl|rheMac2|chr7 (21420767-21420918) | |
| 369-479, gnl|rn3|chr3 (107541542-107541694) | |
| 369-479, gnl|tetNig1|chr10 (5315448-5315594) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (0.197844) | |
| lun (0.150489) | |
| eru (0.120048) |