Non-Coding RNA Search

Ss1.1-reru03c_k13.5

Sequence:


               
               GGTCTCACCCACTACCTCAGAGCACACTGCTAAGAAAATGAAAGCTGCCAGTGAGCTCGG
AATGACACACATGGATTGTTCAACAGGTCCACTGTCCCATGAGCAAAAGCTGTCACAAAG
CTTAGAAATTGCCTTGATGTCAACCCTTGGCTCCATCCCCTCCTTCACCGCTCGGCCGCC
CCGGGGGCAGCTCCAACACCTCGGCACAAGAGGGGGCAGTACTTCCCTGAGGCCCAGCGC
CAGCTCAGAGCAGCCTGGGGGCAGTCTGGGCCCCGAATGCGCCTCCTGCAAAAGAGTGTT
CTCTCCCTACGTCAAAAAGGAGCCCATGTACCAGCTGCCCTGTGGCCACCTCCTGTGCCG
GCCCTGCCTGGCTGAGAAGCAGCGCTCTCTGCCCATGACATGCACAGCCTGCCAGCAGCC
AGTCGCCAGCCAGGACATTCTCCGAGTTCACTTCTGAGTGACTGGCTTCAACCTGAGAAG
ACCCATTGCTGGGAGGAGCTGAGGGGAAGGGAGCGGAGGTTGACGTGCTTGAGGTCTGGC
CAGGTCCCAGGCACAGAGGGGCCCCTGCTTTTCCGGGGGGCTTTCCCTTTATCTCCTCCC
CCAGTGGAGCCTGTGGGCCTAGGAGTGAGGGGTGGGGAGGGGCCCCCTACACCCGCTCAA
GTGGCAATAGGATAACAAAGCCATAGTTTGGGCTGGGAGGGTGGGGAGAAGTCCCTGCCC
TCCCGTGCCTGCCCGCCAGCGCCTCCTGCCAGAGCCTGGGGCCTGCTAGAGCCAGCCCCG
CCCTGCTGCGGGCCTCCCAAACTGTTTGCACACACGCACACACACCCCCATCCTCCAGGG
TGGGTGTGAGTGGAGCATATAGACTGTGGCTCCGGATCTCAGAGAGAGCCTCCACCCTGA
GTGTCACCCGAAAGTGGGCCCAGGCCAGGGTCTGCGGAGTGAGTGGTTCAGCCCTTCTGA
CTGGCAGCGCACTCCGAGCCTTAATAAAGCGATGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCTCACCCACTACCTCAGAGCACACTGCTAAGAAAATGAAAGCTGCCAGTGAGCTCGG
AATGACACACATGGATTGTTCAACAGGTCCACTGTCCCATGAGCAAAAGCTGTCACAAAG
CTTAGAAATTGCCTTGATGTCAACCCTTGGCTCCATCCCCTCCTTCACCGCTCGGCCGCC
CCGGGGGCAGCTCCAACACCTCGGCACAAGAGGGGGCAGTACTTCCCTGAGGCCCAGCGC
CAGCTCAGAGCAGCCTGGGGGCAGTCTGGGCCCCGAATGCGCCTCCTGCAAAAGAGTGTT
CTCTCCCTACGTCAAAAAGGAGCCCATGTACCAGCTGCCCTGTGGCCACCTCCTGTGCCG
GCCCTGCCTGGCTGAGAAGCAGCGCTCTCTGCCCATGACATGCACAGCCTGCCAGCAGCC
AGTCGCCAGCCAGGACATTCTCCGAGTTCACTTCTGAGTGACTGGCTTCAACCTGAGAAG
ACCCATTGCTGGGAGGAGCTGAGGGGAAGGGAGCGGAGGTTGACGTGCTTGAGGTCTGGC
CAGGTCCCAGGCACAGAGGGGCCCCTGCTTTTCCGGGGGGCTTTCCCTTTATCTCCTCCC
CCAGTGGAGCCTGTGGGCCTAGGAGTGAGGGGTGGGGAGGGGCCCCCTACACCCGCTCAA
GTGGCAATAGGATAACAAAGCCATAGTTTGGGCTGGGAGGGTGGGGAGAAGTCCCTGCCC
TCCCGTGCCTGCCCGCCAGCGCCTCCTGCCAGAGCCTGGGGCCTGCTAGAGCCAGCCCCG
CCCTGCTGCGGGCCTCCCAAACTGTTTGCACACACGCACACACACCCCCATCCTCCAGGG
TGGGTGTGAGTGGAGCATATAGACTGTGGCTCCGGATCTCAGAGAGAGCCTCCACCCTGA
GTGTCACCCGAAAGTGGGCCCAGGCCAGGGTCTGCGGAGTGAGTGGTTCAGCCCTTCTGA
CTGGCAGCGCACTCCGAGCCTTAATAAAGCGATGGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|10279682|emb|CAC09908.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10279682|emb|CAC09908.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               486-597, - strand, RNAz p=0.96326
               

               
               676-793, - strand, RNAz p=0.703202

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               486-597, - strand, RNAz p=0.96326
               

               
               676-793, - strand, RNAz p=0.703202

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               246-996, gnl|bosTau2|chr13 (34492978-34492250)
               

               
               246-996, gnl|Hg17|chr20 (3038963-3038266)
               

               
               246-996, gnl|Mm7|chr2 (130332870-130332193)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               246-996, gnl|bosTau2|chr13 (34492978-34492250)
               

               
               246-996, gnl|Hg17|chr20 (3038963-3038266)
               

               
               246-996, gnl|Mm7|chr2 (130332870-130332193)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               col (0.195008)
               

               
               ton (0.1755)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               ton (0.1755)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

	486-597, - strand, RNAz p=0.96326
	676-793, - strand, RNAz p=0.703202

	246-996, gnl\|bosTau2\|chr13 (34492978-34492250)
	246-996, gnl\|Hg17\|chr20 (3038963-3038266)
	246-996, gnl\|Mm7\|chr2 (130332870-130332193)

	col (0.195008)
	ton (0.1755)
	lnt (0.142308)
	pla (0.133672)
	eru (0.120048)
	ecc (0.115035)