Non-Coding RNA Search

Ss1.1-reru04c_h7.5

Sequence:


               
               TGGAGTCCAGCCAGGAGGCCCTGCACGTGACGGAGCGCAAATACCTGAAGCGAGACTGGT
GCAAAACCCAGCCGCTGAAGCAGACGATCCACGAGGAGGGCTGCAACAGTCGCACCATCA
TCAACCGCTTCTGCTACGGCCAGTGCAACTCATTCTACATCCCCAGGCACATCCGGAAGG
AGGAAGGCTCTTTTCAGTCCTGCTCCTTCTGCAAGCCCAAGAAATTCACCACCATGATGG
TCACGCTCAACTGCCCCGAACTCCAGCCACCCACCAAGAAGAAGAGAGTCACGCGCGTCA
AGCAGTGTCGTTGCATATCCATCGATTTGGATTAAGCCCAACACACTCAGCCTGTACTCG
GGACGCAGCCCCGGGCGGGCAGAGCCATACCTAAAGCAACCCAATTCTTACTTGGCTTAA
ACCCAGAGGCGAGAAGAACCACCAGCTGCCTCTTGCCGGGAGCCTGCTAGTGCGTAGTTT
GTGTGCGTGAGTGTGTGTGGGTGCCTGTGGGTGCTTGCAGACACCAGAGGAAACACAGTC
TCTGCTAGAGGCCACTTCCTAGTATGTAAACGTATCTGCTTCCATGCAGGGTGGCACAGA
AAGGCACATTCGGGGGGGCAGGTCTGTGGTCTGGTTCTGCCTTGGTCTCCTCCCCTCCTG
GGGGCCAGAACCCCCAAACGTGGCCAACCCCAAACGTGGTGGGACCCATGCTTTAGCAGA
TCTTTTCCTGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAGTCCAGCCAGGAGGCCCTGCACGTGACGGAGCGCAAATACCTGAAGCGAGACTGGT
GCAAAACCCAGCCGCTGAAGCAGACGATCCACGAGGAGGGCTGCAACAGTCGCACCATCA
TCAACCGCTTCTGCTACGGCCAGTGCAACTCATTCTACATCCCCAGGCACATCCGGAAGG
AGGAAGGCTCTTTTCAGTCCTGCTCCTTCTGCAAGCCCAAGAAATTCACCACCATGATGG
TCACGCTCAACTGCCCCGAACTCCAGCCACCCACCAAGAAGAAGAGAGTCACGCGCGTCA
AGCAGTGTCGTTGCATATCCATCGATTTGGATTAAGCCCAACACACTCAGCCTGTACTCG
GGACGCAGCCCCGGGCGGGCAGAGCCATACCTAAAGCAACCCAATTCTTACTTGGCTTAA
ACCCAGAGGCGAGAAGAACCACCAGCTGCCTCTTGCCGGGAGCCTGCTAGTGCGTAGTTT
GTGTGCGTGAGTGTGTGTGGGTGCCTGTGGGTGCTTGCAGACACCAGAGGAAACACAGTC
TCTGCTAGAGGCCACTTCCTAGTATGTAAACGTATCTGCTTCCATGCAGGGTGGCACAGA
AAGGCACATTCGGGGGGGCAGGTCTGTGGTCTGGTTCTGCCTTGGTCTCCTCCCCTCCTG
GGGGCCAGAACCCCCAAACGTGGCCAACCCCAAACGTGGTGGGACCCATGCTTTAGCAGA
TCTTTTCCTGGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21755240|dbj|BAC04643.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21755240|dbj|BAC04643.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-159, - strand, RNAz p=0.628391
               

               
               431-550, + strand, RNAz p=0.545838

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.628391
               

               
               431-550, + strand, RNAz p=0.545838

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_013372, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_013372, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-602, gnl|bosTau2|chr10 (20332728-20333333)
               

               
               1-602, gnl|Hg17|chr15 (30810404-30811006)
               

               
               1-602, gnl|Mm7|chr2 (113600172-113599593)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-602, gnl|bosTau2|chr10 (20332728-20333333)
               

               
               1-602, gnl|Hg17|chr15 (30810404-30811006)
               

               
               1-602, gnl|Mm7|chr2 (113600172-113599593)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eep (0.122564)
               

               
               eru (0.120048)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               eru (0.120048)

	40-159, - strand, RNAz p=0.628391
	431-550, + strand, RNAz p=0.545838

	1-602, gnl\|bosTau2\|chr10 (20332728-20333333)
	1-602, gnl\|Hg17\|chr15 (30810404-30811006)
	1-602, gnl\|Mm7\|chr2 (113600172-113599593)