Non-Coding RNA Search

Ss1.1-reru06c_d23.5

Sequence:


               
               AATGGATAGACCATTATTTGTATAGACAGTTGTCAGTTTTTCTAACCTTATGGTTTCTAC
TTTTTTGGCACTAAAAATGTTTTGTAGCTGTAGTTCCTGAATTGGAATTACCGGGTCAAA
AAAGTAGGGCTCTGTTTAAGGATCTTGATGCATGTTAGCAAATTATTTCCCAAGACAGCA
CAATTTATGTTATAAATCATATAATCTATATTTCCGCTAGGAATGTATCATACTTTTTAT
TTCATTAGGTCTTGAGAAAAATCATTAAAAACAAAAGACAAAGGAAAAAGCAAACTTTGT
TGGTTCAGTAGTTTAAAAATATGAATCCATATTTTGTTTTTGGTTATAATAGTAAGCAGT
ATTTCAGTTAATGCTTTGTGTAAATTTTGAGATTGGTGCTCGTTTGGAGGCACTGGACTA
CTTACAAAAATGGTATCCATCACGAATTGAAAAAATTGACTATGAGGAGGGCAAGATGTT
GGTCCATTTTGAGCGCTGGAGTCATCGTTATGATGAGTGGATTTACTGGGACAGCAATAG
GTTGCGACCCCTTGAGAGACCTGCCTTGCGAAAAGAAGGGCTGAAGGATGAGGAAGATTT
CTTTGATTTTAAAGCCGGAGAAGAAGTTCTGGCTCGTTGGACAGACTGTCGCTATTACCC
TGCCAAGATTGAGGCGATTAACAAAGAAGGAACGTTCACAGTTCAGTTTTATGATGGAGT
AATTCGTTGTTTAAAGAGAATGCACATTAAAGCCATGCCTGAGGATGCTAAGGGGCAGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGGATAGACCATTATTTGTATAGACAGTTGTCAGTTTTTCTAACCTTATGGTTTCTAC
TTTTTTGGCACTAAAAATGTTTTGTAGCTGTAGTTCCTGAATTGGAATTACCGGGTCAAA
AAAGTAGGGCTCTGTTTAAGGATCTTGATGCATGTTAGCAAATTATTTCCCAAGACAGCA
CAATTTATGTTATAAATCATATAATCTATATTTCCGCTAGGAATGTATCATACTTTTTAT
TTCATTAGGTCTTGAGAAAAATCATTAAAAACAAAAGACAAAGGAAAAAGCAAACTTTGT
TGGTTCAGTAGTTTAAAAATATGAATCCATATTTTGTTTTTGGTTATAATAGTAAGCAGT
ATTTCAGTTAATGCTTTGTGTAAATTTTGAGATTGGTGCTCGTTTGGAGGCACTGGACTA
CTTACAAAAATGGTATCCATCACGAATTGAAAAAATTGACTATGAGGAGGGCAAGATGTT
GGTCCATTTTGAGCGCTGGAGTCATCGTTATGATGAGTGGATTTACTGGGACAGCAATAG
GTTGCGACCCCTTGAGAGACCTGCCTTGCGAAAAGAAGGGCTGAAGGATGAGGAAGATTT
CTTTGATTTTAAAGCCGGAGAAGAAGTTCTGGCTCGTTGGACAGACTGTCGCTATTACCC
TGCCAAGATTGAGGCGATTAACAAAGAAGGAACGTTCACAGTTCAGTTTTATGATGGAGT
AATTCGTTGTTTAAAGAGAATGCACATTAAAGCCATGCCTGAGGATGCTAAGGGGCAGGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61849434|ref|XP_590029.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61849434|ref|XP_590029.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               461-580, + strand, RNAz p=0.807231

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               461-580, + strand, RNAz p=0.807231

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_032205, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_032205, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               21-605, gnl|bosTau2|chr14 (4393914-4394486)
               

               
               21-605, gnl|Hg17|chr8 (133875435-133876010)
               

               
               21-605, gnl|Mm7|chr15 (66677941-66678511)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-605, gnl|bosTau2|chr14 (4393914-4394486)
               

               
               21-605, gnl|Hg17|chr8 (133875435-133876010)
               

               
               21-605, gnl|Mm7|chr15 (66677941-66678511)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cje (0.165235)
               

               
               eru (0.120048)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)
               

               
               eru (0.120048)

	21-605, gnl\|bosTau2\|chr14 (4393914-4394486)
	21-605, gnl\|Hg17\|chr8 (133875435-133876010)
	21-605, gnl\|Mm7\|chr15 (66677941-66678511)