Ss1.1-reru06c_d7.5
|
TGAGCGCGGCAGCTTCGCCATGACTTTGGAGGCGATCCGCTACTCGCGGGGCTCACTACA
GATCCTTGACCAACTGCTGTTGCCCCAGCAGAGCCGCTATGAGGCGGTGGGCTCGGTTCG
CCAGGCCTGGGAGGCCATCCGCGCTATGAAGGTGCGCGGCGCCCCAGCGATTGCGCTCGT
GGGCTGTCTCAGCCTCGCCGTGGAGCTACAGGCGGGCGCTGGGGGACCCGGACTCTCCTC
GCTCGTAGCCTTCGTGCGCGACGCGCTGAGCTTTCTTGTCACCGCCCGGCCCACCGCCGT
CAACATGGCCCGTGCCGCCCGTGACCTGACCGATGTTGCAGCCCAGGAGGCGGAGCGGGA
GGGTGCCACCGAGGAGGCGGTCCGGGAGAGAGTGATCAGCTGGGCCGAGGACATGTTGGA
AAAAGACCTCAGCGACAATCGGAGCATTGGGGACCTGGGAGCCCGCCACCTCCTAGAGCG
GGCTGCGCCTCAGGGTGGCAAGGTGATCGTGCTGACCCACTGCAACACCGGTGCACTGGC
CACTGCTGGCTATGGCACAGCCCTAGGTGTTATCCGCTCACTGCACAGCCTAGGCCGTCT
GGAGCATGCCTTCTGCACAGAGACCCGGCCCTACAACCAGGGAGCCCGGCTGACGGCCTT
CGAACTGGTCTATGAGCACATCCCTGCCACCCTCATCACAGATAGCATGGCGGCAGCTGC
CATGGCCCACAAGGGCGTGTCAGCCGTCGTTGTGGGAGCAGACCGTGTGGTTGCCAATGG
CGACACAGCCAACAAGGTGGGCACCTACCAGCTAGCCATCGCCGCCAAGCACCATGGCAT
CCCCTTCTATGTGGCTGCCCCCAGCTCTTCTTGTGACCTCCGTCTGGAGTCAGGCCAAGA
GATCATCATTGAGGAGCGTCCTGGCCAGGAGCTGACAGATGTCAATGGAGTCAGGATTGC
AGCACCAGGAATAGGAGTTTGGAACCCTGCCTTCGATGTCACCCCACATGACCTCATCAC
TGGCGGCATCATCACAGAACTAGGCGTCTTTGCCCCCAAGGAGCTCCGGGCAGCCCTAAG
TGCCACGGTCCCCTAAGTGAAAGACCCTAGATGGACCCCAGAAGTAACCAACCTAGCTCT
CCATATCCTGCCCCCATTATTTTTATAATAAACTGAACTGAATGGCTTGCCCAAAAGCTG
ACCTTCTTCCCCGCGGCCACAATTCTTCCCAGAGAAGGGAAAGCAGACAGGGCCTTTGCA
TAGCTCTTAAGAGCCTAGCAGCCGGAACAAGGCTGCCTGAGGTCATATACCAGTTTCACT
TTTTCTGCTGTG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TGAGCGCGGCAGCTTCGCCATGACTTTGGAGGCGATCCGCTACTCGCGGGGCTCACTACA
GATCCTTGACCAACTGCTGTTGCCCCAGCAGAGCCGCTATGAGGCGGTGGGCTCGGTTCG
CCAGGCCTGGGAGGCCATCCGCGCTATGAAGGTGCGCGGCGCCCCAGCGATTGCGCTCGT
GGGCTGTCTCAGCCTCGCCGTGGAGCTACAGGCGGGCGCTGGGGGACCCGGACTCTCCTC
GCTCGTAGCCTTCGTGCGCGACGCGCTGAGCTTTCTTGTCACCGCCCGGCCCACCGCCGT
CAACATGGCCCGTGCCGCCCGTGACCTGACCGATGTTGCAGCCCAGGAGGCGGAGCGGGA
GGGTGCCACCGAGGAGGCGGTCCGGGAGAGAGTGATCAGCTGGGCCGAGGACATGTTGGA
AAAAGACCTCAGCGACAATCGGAGCATTGGGGACCTGGGAGCCCGCCACCTCCTAGAGCG
GGCTGCGCCTCAGGGTGGCAAGGTGATCGTGCTGACCCACTGCAACACCGGTGCACTGGC
CACTGCTGGCTATGGCACAGCCCTAGGTGTTATCCGCTCACTGCACAGCCTAGGCCGTCT
GGAGCATGCCTTCTGCACAGAGACCCGGCCCTACAACCAGGGAGCCCGGCTGACGGCCTT
CGAACTGGTCTATGAGCACATCCCTGCCACCCTCATCACAGATAGCATGGCGGCAGCTGC
CATGGCCCACAAGGGCGTGTCAGCCGTCGTTGTGGGAGCAGACCGTGTGGTTGCCAATGG
CGACACAGCCAACAAGGTGGGCACCTACCAGCTAGCCATCGCCGCCAAGCACCATGGCAT
CCCCTTCTATGTGGCTGCCCCCAGCTCTTCTTGTGACCTCCGTCTGGAGTCAGGCCAAGA
GATCATCATTGAGGAGCGTCCTGGCCAGGAGCTGACAGATGTCAATGGAGTCAGGATTGC
AGCACCAGGAATAGGAGTTTGGAACCCTGCCTTCGATGTCACCCCACATGACCTCATCAC
TGGCGGCATCATCACAGAACTAGGCGTCTTTGCCCCCAAGGAGCTCCGGGCAGCCCTAAG
TGCCACGGTCCCCTAAGTGAAAGACCCTAGATGGACCCCAGAAGTAACCAACCTAGCTCT
CCATATCCTGCCCCCATTATTTTTATAATAAACTGAACTGAATGGCTTGCCCAAAAGCTG
ACCTTCTTCCCCGCGGCCACAATTCTTCCCAGAGAAGGGAAAGCAGACAGGGCCTTTGCA
TAGCTCTTAAGAGCCTAGCAGCCGGAACAAGGCTGCCTGAGGTCATATACCAGTTTCACT
TTTTCTGCTGTG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
150-390, gnl|bosTau2|chr7 (8161175-8161415) |
|
150-390, gnl|Hg17|chr19 (13736683-13736923) |
|
150-390, gnl|Mm7|chr8 (82839509-82839274) |
| |
|
741-969, gnl|bosTau2|chr7 (8163996-8164224) |
|
741-969, gnl|canFam2|chr20 (51656681-51656435) |
|
741-969, gnl|danRer3|chrNA (89940727-89940961) |
|
741-969, gnl|dasNov1|scaffold_65151 (9921-9665) |
|
741-969, gnl|echTel1|scaffold_306970 (6777-6531) |
|
741-969, gnl|fr1|chrUn (148423945-148423694) |
|
741-969, gnl|hg17|chr19 (13740628-13740878) |
|
741-969, gnl|Hg17|chr19 (13740635-13740863) |
|
741-969, gnl|loxAfr1|scaffold_71700 (9030-8782) |
|
741-969, gnl|mm7|chr8 (82836485-82836239) |
|
741-969, gnl|Mm7|chr8 (82836474-82836246) |
|
741-969, gnl|monDom2|scaffold_159 (982518-982757) |
|
741-969, gnl|panTro1|chr20 (14371827-14372077) |
|
741-969, gnl|rheMac2|chr19 (13452143-13452393) |
|
741-969, gnl|rn3|chr19 (25599434-25599680) |
|
741-969, gnl|tetNig1|chr18 (2075393-2075138) |
|
741-969, gnl|xenTro1|scaffold_829 (455623-455862) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
150-390, gnl|bosTau2|chr7 (8161175-8161415) |
|
150-390, gnl|Hg17|chr19 (13736683-13736923) |
|
150-390, gnl|Mm7|chr8 (82839509-82839274) |
| |
|
741-969, gnl|bosTau2|chr7 (8163996-8164224) |
|
741-969, gnl|canFam2|chr20 (51656681-51656435) |
|
741-969, gnl|danRer3|chrNA (89940727-89940961) |
|
741-969, gnl|dasNov1|scaffold_65151 (9921-9665) |
|
741-969, gnl|echTel1|scaffold_306970 (6777-6531) |
|
741-969, gnl|fr1|chrUn (148423945-148423694) |
|
741-969, gnl|hg17|chr19 (13740628-13740878) |
|
741-969, gnl|Hg17|chr19 (13740635-13740863) |
|
741-969, gnl|loxAfr1|scaffold_71700 (9030-8782) |
|
741-969, gnl|mm7|chr8 (82836485-82836239) |
|
741-969, gnl|Mm7|chr8 (82836474-82836246) |
|
741-969, gnl|monDom2|scaffold_159 (982518-982757) |
|
741-969, gnl|panTro1|chr20 (14371827-14372077) |
|
741-969, gnl|rheMac2|chr19 (13452143-13452393) |
|
741-969, gnl|rn3|chr19 (25599434-25599680) |
|
741-969, gnl|tetNig1|chr18 (2075393-2075138) |
|
741-969, gnl|xenTro1|scaffold_829 (455623-455862) |
|
elu (0.385356) |
|
pla (0.267344) |
|
eru (0.240096) |
|
tes (0.207814) |
|
col (0.195008) |
|
nco (0.161734) |
|
csp (0.161186) |
|
lnt (0.142308) |
|
ese (0.126502) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
nbm (0.0993246) |
|
eje (0.0988338) |
|
elu (0.385356) |
|
pla (0.267344) |
|
eru (0.240096) |
|
tes (0.207814) |
|
col (0.195008) |
|
nco (0.161734) |
|
csp (0.161186) |
|
lnt (0.142308) |
|
ese (0.126502) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
nbm (0.0993246) |
|
eje (0.0988338) |
