Non-Coding RNA Search

Ss1.1-reru06c_e13.5

Sequence:


               
               ATTCAGATTTCAGAGGTAGACATCGGTCCAGGACTGATCAGGATTTTAGGGGCAGAGAGA
TGGGACCTTGTCTGGAATTTAAAGATAGGGAGATGCCCTCTGTGGATCCAAATATTTTGG
ATTATATTCAGCCCTCTACACAAGATAGAGAACATTCTGGTATGAGTGTGAACAAGAGAG
AAGAATCCACACATGACCATACAACAGAAAGGCCTGCTTTTGGCATTCAGAAGGGAGAAT
TTGAACATTCAGAAACAAGAGAAGGAGAAACACAAGGTGTAGCCTTTGAGCATGAGTCTC
CAGCAGACTTTCAGAACAGCCAAAGTTCTCTTCAAGACCAAGACAAGTCACAGCTTTCTG
GAGGTGAACAACAGAGTTCGGATGCTAGTCTATTTAAAGAAGAAGGTGGTCTGGACTTTC
TTGGTCGGCAAGACACTGATTACAGAAGCATGGAGTACCGTGACGTGGATCACAGGCTGC
CAGGAAGCCAGATATTTGGCTATGGCCAGAGCAAGTCTTTTCCAGAGGGCAAAACTTCCC
AAGATGCCCAACGGGACCTTCAGGATCAAGATTACAGGACGGGCCAAAGTGAAGAGAAAC
CTAGCAAGCTTATTCGATTAAGTGGGGTGCCTGAAAATGCCACAAAAGAAGAGATTCTTA
ATGCGTTTCGGACTCCTGATGGCATGCCTGTGAAGGACTTGCAGTTGAAGGAGTTTAATA
CAGGTTACGACTATGGCTATGTCTGCGTGGAGTTTTCACTCTTGGAAGATGCCATCGGAT
GCATGGAGGCCAACCAGGGAACTCTAATGATCCATGACAAAGAGGTCACCCTCGAGTATG
TACCAAGCCTGGATTTTTGGTACTGCAAACGGTGTAAAGCCAGCACTGGTGGACACCGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCAGATTTCAGAGGTAGACATCGGTCCAGGACTGATCAGGATTTTAGGGGCAGAGAGA
TGGGACCTTGTCTGGAATTTAAAGATAGGGAGATGCCCTCTGTGGATCCAAATATTTTGG
ATTATATTCAGCCCTCTACACAAGATAGAGAACATTCTGGTATGAGTGTGAACAAGAGAG
AAGAATCCACACATGACCATACAACAGAAAGGCCTGCTTTTGGCATTCAGAAGGGAGAAT
TTGAACATTCAGAAACAAGAGAAGGAGAAACACAAGGTGTAGCCTTTGAGCATGAGTCTC
CAGCAGACTTTCAGAACAGCCAAAGTTCTCTTCAAGACCAAGACAAGTCACAGCTTTCTG
GAGGTGAACAACAGAGTTCGGATGCTAGTCTATTTAAAGAAGAAGGTGGTCTGGACTTTC
TTGGTCGGCAAGACACTGATTACAGAAGCATGGAGTACCGTGACGTGGATCACAGGCTGC
CAGGAAGCCAGATATTTGGCTATGGCCAGAGCAAGTCTTTTCCAGAGGGCAAAACTTCCC
AAGATGCCCAACGGGACCTTCAGGATCAAGATTACAGGACGGGCCAAAGTGAAGAGAAAC
CTAGCAAGCTTATTCGATTAAGTGGGGTGCCTGAAAATGCCACAAAAGAAGAGATTCTTA
ATGCGTTTCGGACTCCTGATGGCATGCCTGTGAAGGACTTGCAGTTGAAGGAGTTTAATA
CAGGTTACGACTATGGCTATGTCTGCGTGGAGTTTTCACTCTTGGAAGATGCCATCGGAT
GCATGGAGGCCAACCAGGGAACTCTAATGATCCATGACAAAGAGGTCACCCTCGAGTATG
TACCAAGCCTGGATTTTTGGTACTGCAAACGGTGTAAAGCCAGCACTGGTGGACACCGAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               80-199, - strand, RNAz p=0.828248
               

               
               400-519, + strand, RNAz p=0.963814

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, - strand, RNAz p=0.828248
               

               
               400-519, + strand, RNAz p=0.963814

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               101-191, + strand, RNAmicro p=0.997302

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               101-191, + strand, RNAmicro p=0.997302

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-564, gnl|bosTau2|chr22 (38261466-38262029)
               

               
               1-564, gnl|Hg17|chr3 (49980623-49981186)
               

               
               1-564, gnl|Mm7|chr9 (107584345-107583782)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-564, gnl|bosTau2|chr22 (38261466-38262029)
               

               
               1-564, gnl|Hg17|chr3 (49980623-49981186)
               

               
               1-564, gnl|Mm7|chr9 (107584345-107583782)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	80-199, - strand, RNAz p=0.828248
	400-519, + strand, RNAz p=0.963814

	1-564, gnl\|bosTau2\|chr22 (38261466-38262029)
	1-564, gnl\|Hg17\|chr3 (49980623-49981186)
	1-564, gnl\|Mm7\|chr9 (107584345-107583782)