Non-Coding RNA Search

Ss1.1-reru06c_m3.5

Sequence:


               
               CGCCAGCCGTGTCCATGGAGAGAGGCTGAGGTGGCCGAGCTCCGGCCCAGGTACCGGGTC
GCCGGGACGGCGAAGATGTCCGCTTCGTTAGTCCGGGCCACTGTCCGGGCTGTGAGCAAG
AGGAAGCTGCAGCCCACCCGGGCCGCCCTCACCCTGACACCTTCAGCAGTAAACAAGATA
AAACAACTTCTTAAAGATAAGCCTGAACACGTAGGTGTGAAAGTTGGTGTCCGAACCAGG
GGTTGTAATGGCCTTTCCTACACTCTAGAATATACAAAGACAAAAGGAGACTCTGATGAA
GAAGTTGTTCAAGATGGAGTCAGAGTGTTCATCGAGAAGAAAGCACAGCTAACACTTTTA
GGAACAGAAATGGACTATGTTGAAGACAAATTATCCAGCGAGTTTGTGTTCAATAACCCA
AACATCAAAGGGACATGTGGCTGTGGAGAAAGCTTTAACATCTGACTCCTCAGGACTGCT
CGGGCCGTTGGCCCCAGGAGAGCTGCGGATGCTCTGGGGCTTATTGGAGAAATCATGTGA
CTGTCACGTGCTTAAGGTTTGTAACGTATGACTGCCTTACAAGGAAAATAAAGTGATGCA
TTTTGAAGACGAAGCCAGTGTGTTAGATTCCAGAAAGCTGGGTATTTGTGTTCTTTTTAG
GGGACAGAAAACAAAATGCTTCGGGGGTGTTTTTTAAGTCCTCCCCTCAAGTCATTCTTT
CTGCATCCTTTCTGTTAGAAGCAGCTGCATGACAGTTGCCTTTCTGGGAAGATTTCAGGA
AACATTCGTCACAGGTGTGCATTGGTAGTTCTTTTGAGCAGCTTGAATGTATATATCCCC
AAATGGATGGCTCTCGAAATTCAGCGGCAGGAAGTCTTGACCGCTGGTGTGATGTGATGG
AGCGTGTTTTTCTACTGAAGTGGGCACGGAGTTTCTACTTTTTTATCCAAAATTTCATTG
TCAAATGCCTCCTTTGCATCACCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCAGCCGTGTCCATGGAGAGAGGCTGAGGTGGCCGAGCTCCGGCCCAGGTACCGGGTC
GCCGGGACGGCGAAGATGTCCGCTTCGTTAGTCCGGGCCACTGTCCGGGCTGTGAGCAAG
AGGAAGCTGCAGCCCACCCGGGCCGCCCTCACCCTGACACCTTCAGCAGTAAACAAGATA
AAACAACTTCTTAAAGATAAGCCTGAACACGTAGGTGTGAAAGTTGGTGTCCGAACCAGG
GGTTGTAATGGCCTTTCCTACACTCTAGAATATACAAAGACAAAAGGAGACTCTGATGAA
GAAGTTGTTCAAGATGGAGTCAGAGTGTTCATCGAGAAGAAAGCACAGCTAACACTTTTA
GGAACAGAAATGGACTATGTTGAAGACAAATTATCCAGCGAGTTTGTGTTCAATAACCCA
AACATCAAAGGGACATGTGGCTGTGGAGAAAGCTTTAACATCTGACTCCTCAGGACTGCT
CGGGCCGTTGGCCCCAGGAGAGCTGCGGATGCTCTGGGGCTTATTGGAGAAATCATGTGA
CTGTCACGTGCTTAAGGTTTGTAACGTATGACTGCCTTACAAGGAAAATAAAGTGATGCA
TTTTGAAGACGAAGCCAGTGTGTTAGATTCCAGAAAGCTGGGTATTTGTGTTCTTTTTAG
GGGACAGAAAACAAAATGCTTCGGGGGTGTTTTTTAAGTCCTCCCCTCAAGTCATTCTTT
CTGCATCCTTTCTGTTAGAAGCAGCTGCATGACAGTTGCCTTTCTGGGAAGATTTCAGGA
AACATTCGTCACAGGTGTGCATTGGTAGTTCTTTTGAGCAGCTTGAATGTATATATCCCC
AAATGGATGGCTCTCGAAATTCAGCGGCAGGAAGTCTTGACCGCTGGTGTGATGTGATGG
AGCGTGTTTTTCTACTGAAGTGGGCACGGAGTTTCTACTTTTTTATCCAAAATTTCATTG
TCAAATGCCTCCTTTGCATCACCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|18025262|gb|AAG40950.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|18025262|gb|AAG40950.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               335-452, + strand, RNAz p=0.581452

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               335-452, + strand, RNAz p=0.581452

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-156, gnl|bosTau2|chr24 (26430328-26430172)
               

               
               1-156, gnl|Hg17|chr9 (86127003-86126847)
               

               
               1-156, gnl|Mm7|chr13 (58878202-58878049)
               


               
               256-975, gnl|bosTau2|chr1 (17472611-17473344)
               

               
               256-975, gnl|Hg17|chr5 (62108654-62107972)
               

               
               256-975, gnl|Mm7|chr13 (20861483-20862256)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-156, gnl|bosTau2|chr24 (26430328-26430172)
               

               
               1-156, gnl|Hg17|chr9 (86127003-86126847)
               

               
               1-156, gnl|Mm7|chr13 (58878202-58878049)
               


               
               256-975, gnl|bosTau2|chr1 (17472611-17473344)
               

               
               256-975, gnl|Hg17|chr5 (62108654-62107972)
               

               
               256-975, gnl|Mm7|chr13 (20861483-20862256)

Expressed library(ies): 32 entry(ies)

More info

Expressed library(ies): 32 entry(ies)

Help | Less info


               
               che (4.49836)
               

               
               cki (1.48711)
               

               
               cte (0.87822)
               

               
               hea (0.613497)
               

               
               sme (0.610874)
               

               
               cst (0.560146)
               

               
               ste (0.540833)
               

               
               aor (0.390549)
               

               
               cut (0.339847)
               

               
               ssp (0.271039)
               

               
               nmm (0.265604)
               

               
               ret (0.257467)
               

               
               cly (0.241284)
               

               
               pgl (0.236967)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               tes (0.207814)
               

               
               nbm (0.198649)
               

               
               cmu (0.186393)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 32 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (4.49836)
               

               
               cki (1.48711)
               

               
               cte (0.87822)
               

               
               hea (0.613497)
               

               
               sme (0.610874)
               

               
               cst (0.560146)
               

               
               ste (0.540833)
               

               
               aor (0.390549)
               

               
               cut (0.339847)
               

               
               ssp (0.271039)
               

               
               nmm (0.265604)
               

               
               ret (0.257467)
               

               
               cly (0.241284)
               

               
               pgl (0.236967)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               tes (0.207814)
               

               
               nbm (0.198649)
               

               
               cmu (0.186393)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	1-156, gnl\|bosTau2\|chr24 (26430328-26430172)
	1-156, gnl\|Hg17\|chr9 (86127003-86126847)
	1-156, gnl\|Mm7\|chr13 (58878202-58878049)

	256-975, gnl\|bosTau2\|chr1 (17472611-17473344)
	256-975, gnl\|Hg17\|chr5 (62108654-62107972)
	256-975, gnl\|Mm7\|chr13 (20861483-20862256)

	che (4.49836)
	cki (1.48711)
	cte (0.87822)
	hea (0.613497)
	sme (0.610874)
	cst (0.560146)
	ste (0.540833)
	aor (0.390549)
	cut (0.339847)
	ssp (0.271039)
	nmm (0.265604)
	ret (0.257467)
	cly (0.241284)
	pgl (0.236967)
	ece (0.229305)
	spc (0.226732)
	tes (0.207814)
	nbm (0.198649)
	cmu (0.186393)
	ton (0.1755)
	sin (0.174948)
	eye (0.170503)
	nje (0.16592)
	cje (0.165235)
	nco (0.161734)
	fco (0.157208)
	fat (0.147427)
	hyp (0.142837)
	nca (0.136874)
	eru (0.120048)
	jej (0.0989218)
	ldo (0.0970026)