Non-Coding RNA Search

Ss1.1-reru07c_e11.5

Sequence:


               
               TGCCCCTGCCCCAGCCACGACCTCAGGCCACTGGGAGACACAAGAGGAGGCCAAGGACAC
AGAAGAGGACAGCAGTGCTGCTGACAGATGGGATGATGAAGACTGGGGCAGCTTGGAGCA
GGAGGCCGAGTCTGTGCTGGCCCAGCAGGACGACTGGAGCACTGGGGGCCAATCCAGCCA
GCCTGGGCAGACCAGCAACTCTGGCCACAAATCCCCAGAGTCAGACTGGAGCAGTTGGGA
AGCTGAGGGCTCATGGGAGCAGGCTTGGCAGGAGCCAAGCCCCCCAGAGCCGCCCCCTGA
GGGCACACGACTGGCCAGCGAGTATAACTGGGGTGGACCAGAGCCTAGTGACAAAGGCGA
CCCCTTTGCTGCCCTGTCAGCGCGTCGGGAGGCTGCTGCTCAGCCAAGACCCGACTCATG
GGGTGATGACAACTGGGAGGGCCTGGAGACCGAGAGCCGACAGGCCAAGGCGGAGCTAGC
CCGGAAGAAGCGTGAGGAGCGGCGGAGGGAGATGGAGGCCAAACGCGCAGAGAAAAAGGC
GGCCAAGGGCCCCATGAAGCTGGGGACCCGGAAGCTGGACTGAATCGTGGGTGTGGGCGC
TTACCAGCTAGGGAGAGCAGGCCCCGCAGATGTATTTATTGTACAAACCATGCGAGCCTG
GCCTGTGTGGCCAGGCACATCTCACATGTACATAATCAGAGCCACAATAAATTCTATTTC
ACACCCCTGTGCTGGGCTCAGTGCAGCCCCTCCAAGGAGCTGGGGTCCAGCGCTGCCCTG
GGGAGTCTGCTCACATGGACAGGAACATCAGTTTGCTTTGAAAACCAAGAGTAAAGAGGC
ACGATCTGATTTATCAGTTTCTAGGAAACGCCCTCCGGAAGCTCCCCCGAGAAACCCAAC
ATCTGCCTAATGAACCGGCTAATAAGGGTGACTTTGGAATATGGGGCCGGGGAAGGAGTC
TGCGGGCCGAAAGGTCCCTGGGTCCGAGCCCCGAGTTGGGGCCCAAGCGAGAGGGCCAAG
CTTGCTTGCCCCAAGTGTCAGGCAGAAACCCCTCGCCGCCGAAGTGATCGCCGAGGTCCC
GGCAGGTGGAGTCAGCGGCGGCGCTGGGGCACGCAGGCTCCATGCGGGCGGCTGCGCGCG
AAGCCAGCTTTGCAGACGCAGCGGAAGGAACCGCTCGTGTTCACGCAGCGCTCGCTCTTA
CACAGTAGCCCGCGCTGGTTCAGCTCTCTGCACTCATCGATGTCGACACAGCGCGCGCGG
GAGGCGTCCAGCTGGAAGCCGCCAGGACACTCGCACACCGCTCCGCCGGGTCGCGGCACA
CAGCGGCCGCTCACGCAGCGGCACTCGTCTGAATCCTCCTCGGAGCTGTCCTCTTCTCGC
GGGGGCTTCCCCAGCAGCAGGGGGCTCGTGTCCCAGAAGGAATTGCTCTCACTCTGTGAC
GTCGGGCACTGGGACCCGGCGCCGCGCGGCGGGCACGGGCGGCACTGGGCTCCCCATCCT
CGGCCCTGGCGACAGCAGCAGTCGTCGAAGGTGAGGGCGGGCCCAGACACGGGGACCGCA
CACATGCCATCCTCTCCGCGCTGGCTCCAGCACACGTCCCGCCGCTCCGGGGCACGGTCG
GCCGGGCTTTCGGGGAGCTGGCAGTCGCGGCCTGAGGGCCCAGGTACCCAGGGCGGGCGG
CACTCGCAGCGATAGGAGCCCGGCAGGTTGACGCAGCGGCCGTGGCGGCAGGCTGTGGGG
TCCTGGCATTCGTCCACGTCCATCTCCTCTGGGCTCAGACACTGCCGCTGCGCGGGGCTG
TACTCGGCCGGGGGCGTGCAGGCGCAGCGGTAGCCACCGCGCGTGTTCTCACACACTCCG
TTCCGGCAGTTAGACTCGTCCAAGCACTCATCCACGTCCACGCATTCCAGCAGGTTCCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCCCTGCCCCAGCCACGACCTCAGGCCACTGGGAGACACAAGAGGAGGCCAAGGACAC
AGAAGAGGACAGCAGTGCTGCTGACAGATGGGATGATGAAGACTGGGGCAGCTTGGAGCA
GGAGGCCGAGTCTGTGCTGGCCCAGCAGGACGACTGGAGCACTGGGGGCCAATCCAGCCA
GCCTGGGCAGACCAGCAACTCTGGCCACAAATCCCCAGAGTCAGACTGGAGCAGTTGGGA
AGCTGAGGGCTCATGGGAGCAGGCTTGGCAGGAGCCAAGCCCCCCAGAGCCGCCCCCTGA
GGGCACACGACTGGCCAGCGAGTATAACTGGGGTGGACCAGAGCCTAGTGACAAAGGCGA
CCCCTTTGCTGCCCTGTCAGCGCGTCGGGAGGCTGCTGCTCAGCCAAGACCCGACTCATG
GGGTGATGACAACTGGGAGGGCCTGGAGACCGAGAGCCGACAGGCCAAGGCGGAGCTAGC
CCGGAAGAAGCGTGAGGAGCGGCGGAGGGAGATGGAGGCCAAACGCGCAGAGAAAAAGGC
GGCCAAGGGCCCCATGAAGCTGGGGACCCGGAAGCTGGACTGAATCGTGGGTGTGGGCGC
TTACCAGCTAGGGAGAGCAGGCCCCGCAGATGTATTTATTGTACAAACCATGCGAGCCTG
GCCTGTGTGGCCAGGCACATCTCACATGTACATAATCAGAGCCACAATAAATTCTATTTC
ACACCCCTGTGCTGGGCTCAGTGCAGCCCCTCCAAGGAGCTGGGGTCCAGCGCTGCCCTG
GGGAGTCTGCTCACATGGACAGGAACATCAGTTTGCTTTGAAAACCAAGAGTAAAGAGGC
ACGATCTGATTTATCAGTTTCTAGGAAACGCCCTCCGGAAGCTCCCCCGAGAAACCCAAC
ATCTGCCTAATGAACCGGCTAATAAGGGTGACTTTGGAATATGGGGCCGGGGAAGGAGTC
TGCGGGCCGAAAGGTCCCTGGGTCCGAGCCCCGAGTTGGGGCCCAAGCGAGAGGGCCAAG
CTTGCTTGCCCCAAGTGTCAGGCAGAAACCCCTCGCCGCCGAAGTGATCGCCGAGGTCCC
GGCAGGTGGAGTCAGCGGCGGCGCTGGGGCACGCAGGCTCCATGCGGGCGGCTGCGCGCG
AAGCCAGCTTTGCAGACGCAGCGGAAGGAACCGCTCGTGTTCACGCAGCGCTCGCTCTTA
CACAGTAGCCCGCGCTGGTTCAGCTCTCTGCACTCATCGATGTCGACACAGCGCGCGCGG
GAGGCGTCCAGCTGGAAGCCGCCAGGACACTCGCACACCGCTCCGCCGGGTCGCGGCACA
CAGCGGCCGCTCACGCAGCGGCACTCGTCTGAATCCTCCTCGGAGCTGTCCTCTTCTCGC
GGGGGCTTCCCCAGCAGCAGGGGGCTCGTGTCCCAGAAGGAATTGCTCTCACTCTGTGAC
GTCGGGCACTGGGACCCGGCGCCGCGCGGCGGGCACGGGCGGCACTGGGCTCCCCATCCT
CGGCCCTGGCGACAGCAGCAGTCGTCGAAGGTGAGGGCGGGCCCAGACACGGGGACCGCA
CACATGCCATCCTCTCCGCGCTGGCTCCAGCACACGTCCCGCCGCTCCGGGGCACGGTCG
GCCGGGCTTTCGGGGAGCTGGCAGTCGCGGCCTGAGGGCCCAGGTACCCAGGGCGGGCGG
CACTCGCAGCGATAGGAGCCCGGCAGGTTGACGCAGCGGCCGTGGCGGCAGGCTGTGGGG
TCCTGGCATTCGTCCACGTCCATCTCCTCTGGGCTCAGACACTGCCGCTGCGCGGGGCTG
TACTCGGCCGGGGGCGTGCAGGCGCAGCGGTAGCCACCGCGCGTGTTCTCACACACTCCG
TTCCGGCAGTTAGACTCGTCCAAGCACTCATCCACGTCCACGCATTCCAGCAGGTTCCCG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9CVK2_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9CVK2_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               185-375, - strand, RNAz p=0.986464

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               185-375, - strand, RNAz p=0.986464

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               5-719, gnl|bosTau2|chr10 (25300177-25300879)
               

               
               5-719, gnl|Hg17|chr11 (65061062-65062747)
               

               
               5-719, gnl|Mm7|chr19 (5654583-5653237)
               


               
               1244-1383, gnl|bosTau2|chr29 (38641105-38641245)
               

               
               1244-1383, gnl|Hg17|chr11 (65063375-65063515)
               

               
               1244-1383, gnl|Mm7|chr19 (5652648-5652508)
               


               
               1456-1622, gnl|bosTau2|chr29 (38641499-38641665)
               

               
               1456-1622, gnl|Hg17|chr11 (65063766-65063932)
               

               
               1456-1622, gnl|Mm7|chr19 (5652279-5652113)
               


               
               1760-1898, gnl|bosTau2|chr29 (38642042-38642180)
               

               
               1760-1898, gnl|Hg17|chr11 (65064292-65064430)
               

               
               1760-1898, gnl|Mm7|chr19 (5651737-5651599)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-719, gnl|bosTau2|chr10 (25300177-25300879)
               

               
               5-719, gnl|Hg17|chr11 (65061062-65062747)
               

               
               5-719, gnl|Mm7|chr19 (5654583-5653237)
               


               
               1244-1383, gnl|bosTau2|chr29 (38641105-38641245)
               

               
               1244-1383, gnl|Hg17|chr11 (65063375-65063515)
               

               
               1244-1383, gnl|Mm7|chr19 (5652648-5652508)
               


               
               1456-1622, gnl|bosTau2|chr29 (38641499-38641665)
               

               
               1456-1622, gnl|Hg17|chr11 (65063766-65063932)
               

               
               1456-1622, gnl|Mm7|chr19 (5652279-5652113)
               


               
               1760-1898, gnl|bosTau2|chr29 (38642042-38642180)
               

               
               1760-1898, gnl|Hg17|chr11 (65064292-65064430)
               

               
               1760-1898, gnl|Mm7|chr19 (5651737-5651599)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               jca (0.45584)
               

               
               amn (0.417711)
               

               
               pla (0.401016)
               

               
               fcc (0.39557)
               

               
               eru (0.360144)
               

               
               ese (0.253004)
               

               
               ebs (0.236602)
               

               
               nbm (0.198649)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               cag (0.151194)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.45584)
               

               
               amn (0.417711)
               

               
               pla (0.401016)
               

               
               fcc (0.39557)
               

               
               eru (0.360144)
               

               
               ese (0.253004)
               

               
               ebs (0.236602)
               

               
               nbm (0.198649)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               cag (0.151194)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	5-719, gnl\|bosTau2\|chr10 (25300177-25300879)
	5-719, gnl\|Hg17\|chr11 (65061062-65062747)
	5-719, gnl\|Mm7\|chr19 (5654583-5653237)

	1244-1383, gnl\|bosTau2\|chr29 (38641105-38641245)
	1244-1383, gnl\|Hg17\|chr11 (65063375-65063515)
	1244-1383, gnl\|Mm7\|chr19 (5652648-5652508)

	1456-1622, gnl\|bosTau2\|chr29 (38641499-38641665)
	1456-1622, gnl\|Hg17\|chr11 (65063766-65063932)
	1456-1622, gnl\|Mm7\|chr19 (5652279-5652113)

	1760-1898, gnl\|bosTau2\|chr29 (38642042-38642180)
	1760-1898, gnl\|Hg17\|chr11 (65064292-65064430)
	1760-1898, gnl\|Mm7\|chr19 (5651737-5651599)

	jca (0.45584)
	amn (0.417711)
	pla (0.401016)
	fcc (0.39557)
	eru (0.360144)
	ese (0.253004)
	ebs (0.236602)
	nbm (0.198649)
	nep (0.183925)
	eye (0.170503)
	cag (0.151194)
	ute (0.132784)
	cov (0.132153)
	med (0.116252)
	ecc (0.115035)
	cty (0.10408)