Non-Coding RNA Search

Ss1.1-reru07c_j15.5

Sequence:


               
               AAATTTAAGCAGCTGTGGCCATGTAATTTAAAACCTCTGAAAAGTGTGCTGCAGTCCGTG
CACAGAGTTAGTATAACATGAGGGCTGGATGTAGCCCGTTCTCTGGAGGACTTCTTCGCC
TGCCGCAGCAAAGAGAAGGCTGAAAGACAAACCTGGGTGCAGCCGGAAAGGTCCAGATAG
ATGAGCTTGTGGCATCCGTTCCCCAAATTCAGGGACGCCATCGCCGTACCTCACCTGGGT
CTCCTTGTTCCCGAACTTCATTCGTTAAAATCACCCACACTTGGATTTCAAAGGAATACT
TTCATTGTTCCATCTGTCACACCAAGTAATTAGGGCCAGCTGGATGTCAGGATGCGCGTA
GTTACCATCATAATCCTGCTCTTCTTTTGCAAAGCTGCTGAGCTCCGCAGGGCAAGCCCC
GGGGGTTCAAGAAACCGAGTGAGTCATGGCGGGGCTGGTGGGAGCCGGAGAGGCTCCAAC
CCCGTCAAACGCTACGCACCAGGCCTCCCCTGTGAAGTGTACACGTATCTTCACGAGAAA
TACTTAGATTGTCAAGAAAGAAAACTAGTTTATGTGCTGTCCGGCTGGCCAGAGGATTTG
CTGCACATGCTCTTAGCAAGAAACAAAATCCGCGTATTGAAGAACAAGATGTTTTCCAAG
TTTAAAAAGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATTTAAGCAGCTGTGGCCATGTAATTTAAAACCTCTGAAAAGTGTGCTGCAGTCCGTG
CACAGAGTTAGTATAACATGAGGGCTGGATGTAGCCCGTTCTCTGGAGGACTTCTTCGCC
TGCCGCAGCAAAGAGAAGGCTGAAAGACAAACCTGGGTGCAGCCGGAAAGGTCCAGATAG
ATGAGCTTGTGGCATCCGTTCCCCAAATTCAGGGACGCCATCGCCGTACCTCACCTGGGT
CTCCTTGTTCCCGAACTTCATTCGTTAAAATCACCCACACTTGGATTTCAAAGGAATACT
TTCATTGTTCCATCTGTCACACCAAGTAATTAGGGCCAGCTGGATGTCAGGATGCGCGTA
GTTACCATCATAATCCTGCTCTTCTTTTGCAAAGCTGCTGAGCTCCGCAGGGCAAGCCCC
GGGGGTTCAAGAAACCGAGTGAGTCATGGCGGGGCTGGTGGGAGCCGGAGAGGCTCCAAC
CCCGTCAAACGCTACGCACCAGGCCTCCCCTGTGAAGTGTACACGTATCTTCACGAGAAA
TACTTAGATTGTCAAGAAAGAAAACTAGTTTATGTGCTGTCCGGCTGGCCAGAGGATTTG
CTGCACATGCTCTTAGCAAGAAACAAAATCCGCGTATTGAAGAACAAGATGTTTTCCAAG
TTTAAAAAGCTG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-216, gnl|bosTau2|chr4 (21522209-21522431)
               

               
               1-216, gnl|Hg17|chr7 (102147332-102147547)
               

               
               1-216, gnl|Mm7|chr5 (20581463-20581684)
               


               
               223-672, gnl|bosTau2|chr4 (21541201-21541649)
               

               
               223-672, gnl|Hg17|chr7 (102168182-102168632)
               

               
               223-672, gnl|Mm7|chr5 (20598368-20598811)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-216, gnl|bosTau2|chr4 (21522209-21522431)
               

               
               1-216, gnl|Hg17|chr7 (102147332-102147547)
               

               
               1-216, gnl|Mm7|chr5 (20581463-20581684)
               


               
               223-672, gnl|bosTau2|chr4 (21541201-21541649)
               

               
               223-672, gnl|Hg17|chr7 (102168182-102168632)
               

               
               223-672, gnl|Mm7|chr5 (20598368-20598811)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eru (0.240096)
               

               
               ese (0.126502)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.240096)
               

               
               ese (0.126502)

	1-216, gnl\|bosTau2\|chr4 (21522209-21522431)
	1-216, gnl\|Hg17\|chr7 (102147332-102147547)
	1-216, gnl\|Mm7\|chr5 (20581463-20581684)

	223-672, gnl\|bosTau2\|chr4 (21541201-21541649)
	223-672, gnl\|Hg17\|chr7 (102168182-102168632)
	223-672, gnl\|Mm7\|chr5 (20598368-20598811)