Ss1.1-reru07c_m2.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGCAACGACTCAGTTTGACCTCGAAGGAGTGACTCTTTCCTTAGGGATGGTGGTATCCT CCCCAAGCCAGGCCTTGGACTGCAGTCTCCAGCTAAAGGTCTTGGCAGGAGAGCTGTCAT TCTTGGGGTTCCAGAGGTGGCCTAATTGGCCTTTCCTTCCTGGATGGCCCAAGAGAGAGA GAGGCCCAAGCCCTGCTCTTCGACTCCAACTTAAAGGACTCCTTAGTTCTGAGAGGAGAG AGGAAGGTTCTCTCTACAGAGACTGCACCCTCTGCAGCCTTGCAGCCGGAATGACCTTGC ATCTCTCACATGCGGGGCAAGCCATGGCCTGGTGCTGGGCATCCATCAAGTAGATGGTGA GGCTTAAGAGGCTGACTGCCTCCTAGTAACTCCTGGGGATTCTGGGTACTATCTCAGGGA CCCTCCTAGAAAACATTGCTCCTGCAGTGAAAAATACACACTATGTCACTCTGGCCACAG AATGCCAGCCAGATGCACTGCTGGCCTGAACTGCCCTCCACACTGGGCTTCCTGCACAGA GCCTGGCAGCCAGAGCGTCTATGGCCAGAGGGAGGAAAGCTTAGTAAGTTAAGCCTCTGT TCCTCACTGGAGCCTGACAGATACTCTCAGCCCAGCTTTAGAATTTTGAACCCAGAGGCA AGAGAAAGGACCTGGAGGAAGAAAAGTCACAGAGCAGCCCAGTCCTCCGGCTGGTTTCTG GTGAGGCCTCTGTTCATCAGCGAAAGCTGTTTCCTCAGGAGAGAGTTCCAGAAGGGGAAC CTCTATTCTCCGAGGCCACAGACCCTGTTTGCTGATGTCAACACGCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGCAACGACTCAGTTTGACCTCGAAGGAGTGACTCTTTCCTTAGGGATGGTGGTATCCT CCCCAAGCCAGGCCTTGGACTGCAGTCTCCAGCTAAAGGTCTTGGCAGGAGAGCTGTCAT TCTTGGGGTTCCAGAGGTGGCCTAATTGGCCTTTCCTTCCTGGATGGCCCAAGAGAGAGA GAGGCCCAAGCCCTGCTCTTCGACTCCAACTTAAAGGACTCCTTAGTTCTGAGAGGAGAG AGGAAGGTTCTCTCTACAGAGACTGCACCCTCTGCAGCCTTGCAGCCGGAATGACCTTGC ATCTCTCACATGCGGGGCAAGCCATGGCCTGGTGCTGGGCATCCATCAAGTAGATGGTGA GGCTTAAGAGGCTGACTGCCTCCTAGTAACTCCTGGGGATTCTGGGTACTATCTCAGGGA CCCTCCTAGAAAACATTGCTCCTGCAGTGAAAAATACACACTATGTCACTCTGGCCACAG AATGCCAGCCAGATGCACTGCTGGCCTGAACTGCCCTCCACACTGGGCTTCCTGCACAGA GCCTGGCAGCCAGAGCGTCTATGGCCAGAGGGAGGAAAGCTTAGTAAGTTAAGCCTCTGT TCCTCACTGGAGCCTGACAGATACTCTCAGCCCAGCTTTAGAATTTTGAACCCAGAGGCA AGAGAAAGGACCTGGAGGAAGAAAAGTCACAGAGCAGCCCAGTCCTCCGGCTGGTTTCTG GTGAGGCCTCTGTTCATCAGCGAAAGCTGTTTCCTCAGGAGAGAGTTCCAGAAGGGGAAC CTCTATTCTCCGAGGCCACAGACCCTGTTTGCTGATGTCAACACGCTG |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 11-132, - strand, RNAz p=0.999766 | |
| 150-263, - strand, RNAz p=0.858653 | |
| 442-565, - strand, RNAz p=0.965938 | |
| 455-557, - strand, RNAz p=0.969435 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 11-132, - strand, RNAz p=0.999766 | |
| 150-263, - strand, RNAz p=0.858653 | |
| 442-565, - strand, RNAz p=0.965938 | |
| 455-557, - strand, RNAz p=0.969435 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 40-129, + strand, RNAmicro p=0.923713 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 11-132, gnl|bosTau2|chrX (23533966-23533844) | |
| 11-132, gnl|canFam2|chrX (59107013-59107107) | |
| 11-132, gnl|dasNov1|scaffold_38524 (8431-8336) | |
| 11-132, gnl|echTel1|scaffold_321263 (1091-1019) | |
| 11-132, gnl|hg17|chrX (71131661-71131755) | |
| 11-132, gnl|Hg17|chrX (71131784-71131643) | |
| 11-132, gnl|loxAfr1|scaffold_6532 (75730-75636) | |
| 11-132, gnl|mm7|chrX (97395499-97395587) | |
| 11-132, gnl|Mm7|chrX (97395616-97395502) | |
| 11-132, gnl|oryCun1|scaffold_203442 (91035-90947) | |
| 11-132, gnl|panTro1|chrX (73397791-73397885) | |
| 11-132, gnl|rheMac2|chrX (71046129-71046223) | |
| 11-132, gnl|rn3|chrX (90209304-90209394) | |
| 150-740, gnl|bosTau2|chrX (23533845-23533236) | |
| 150-740, gnl|canFam2|chrX (59106337-59106807) | |
| 150-740, gnl|dasNov1|scaffold_38524 (9107-8644) | |
| 150-740, gnl|echTel1|scaffold_321263 (1906-1294) | |
| 150-740, gnl|hg17|chrX (71131003-71131482) | |
| 150-740, gnl|Hg17|chrX (71131644-71131041) | |
| 150-740, gnl|mm7|chrX (97394851-97395325) | |
| 150-740, gnl|Mm7|chrX (97395501-97394889) | |
| 150-740, gnl|oryCun1|scaffold_203442 (91697-91233) | |
| 150-740, gnl|panTro1|chrX (73397133-73397612) | |
| 150-740, gnl|rheMac2|chrX (71045463-71045938) | |
| 150-740, gnl|rn3|chrX (90208659-90209131) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 11-132, gnl|bosTau2|chrX (23533966-23533844) | |
| 11-132, gnl|canFam2|chrX (59107013-59107107) | |
| 11-132, gnl|dasNov1|scaffold_38524 (8431-8336) | |
| 11-132, gnl|echTel1|scaffold_321263 (1091-1019) | |
| 11-132, gnl|hg17|chrX (71131661-71131755) | |
| 11-132, gnl|Hg17|chrX (71131784-71131643) | |
| 11-132, gnl|loxAfr1|scaffold_6532 (75730-75636) | |
| 11-132, gnl|mm7|chrX (97395499-97395587) | |
| 11-132, gnl|Mm7|chrX (97395616-97395502) | |
| 11-132, gnl|oryCun1|scaffold_203442 (91035-90947) | |
| 11-132, gnl|panTro1|chrX (73397791-73397885) | |
| 11-132, gnl|rheMac2|chrX (71046129-71046223) | |
| 11-132, gnl|rn3|chrX (90209304-90209394) | |
| 150-740, gnl|bosTau2|chrX (23533845-23533236) | |
| 150-740, gnl|canFam2|chrX (59106337-59106807) | |
| 150-740, gnl|dasNov1|scaffold_38524 (9107-8644) | |
| 150-740, gnl|echTel1|scaffold_321263 (1906-1294) | |
| 150-740, gnl|hg17|chrX (71131003-71131482) | |
| 150-740, gnl|Hg17|chrX (71131644-71131041) | |
| 150-740, gnl|mm7|chrX (97394851-97395325) | |
| 150-740, gnl|Mm7|chrX (97395501-97394889) | |
| 150-740, gnl|oryCun1|scaffold_203442 (91697-91233) | |
| 150-740, gnl|panTro1|chrX (73397133-73397612) | |
| 150-740, gnl|rheMac2|chrX (71045463-71045938) | |
| 150-740, gnl|rn3|chrX (90208659-90209131) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.126502) | |
| eru (0.120048) |