Non-Coding RNA Search

Ss1.1-reru09c_g14.5

Sequence:


               
               GGGACCCCATGACAAGGGTGTCAAGAGGACAGCTGAAGTACCTGTGAGTGAGGCCAGTGG
GCAGGACCACCCAGCCAAAGCAACAAAGCAGGATGTAGAGGATACAGGAAGTGACGCCAA
AAGAAAACGGGGGCGCCCTCGAAAAAAATCAGGTGGAAGTAGGGAAAGGAACTCTACCCC
TGACAAGTCAGCAGATGCCGTGGACGCTGCCCAGCCCTCAAGGTTACCACCGGAGACGTG
GGCCTCTGGAGGGGAAAGCAATTCAGAGAGGCCAGGGCTAGGGGGAGAGGCTGAGAAGGG
GGTGCTTGCCCAAGGTCAGGAGGGTGGTGCTGTTTCCCGAGGAGGAAGGGGCCCCAGTTC
CCGGCATGCCAAAGAAACAGAAGATAAAATTCCTCCTGTCGCCCCGAAAGTGAGTGTTAT
CAGGGGCAGTAGAAGCCAAAAGGAGGCTCTTCATTTGGTTAAGGGAGAGGTAGACACGGC
GGCACAGGGTAATAAAGACTTAAAGGGACACGTGCTTCAAAGCTCCTTACCCCTGGAGCG
GAAAGACCCCAAAGCCACACCCCCGTGATAGGTATGTGAGGAAGAGTGTTTATATCCCCG
CGTTAACTCTGCCGGTCTCTGCACTTGCTTCTCACCTGGCTCTTCATTCTCTCCTGCATA
GACAGCTGAGGCACCTTGTCTTACACAGTGCCTGGTTCTAGCCTCTTGCCTTTCCAGCTC
AGTACCCTTGGCTTTAGAGTCGCTAATAAACCTGTAGTGCCCATCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGACCCCATGACAAGGGTGTCAAGAGGACAGCTGAAGTACCTGTGAGTGAGGCCAGTGG
GCAGGACCACCCAGCCAAAGCAACAAAGCAGGATGTAGAGGATACAGGAAGTGACGCCAA
AAGAAAACGGGGGCGCCCTCGAAAAAAATCAGGTGGAAGTAGGGAAAGGAACTCTACCCC
TGACAAGTCAGCAGATGCCGTGGACGCTGCCCAGCCCTCAAGGTTACCACCGGAGACGTG
GGCCTCTGGAGGGGAAAGCAATTCAGAGAGGCCAGGGCTAGGGGGAGAGGCTGAGAAGGG
GGTGCTTGCCCAAGGTCAGGAGGGTGGTGCTGTTTCCCGAGGAGGAAGGGGCCCCAGTTC
CCGGCATGCCAAAGAAACAGAAGATAAAATTCCTCCTGTCGCCCCGAAAGTGAGTGTTAT
CAGGGGCAGTAGAAGCCAAAAGGAGGCTCTTCATTTGGTTAAGGGAGAGGTAGACACGGC
GGCACAGGGTAATAAAGACTTAAAGGGACACGTGCTTCAAAGCTCCTTACCCCTGGAGCG
GAAAGACCCCAAAGCCACACCCCCGTGATAGGTATGTGAGGAAGAGTGTTTATATCCCCG
CGTTAACTCTGCCGGTCTCTGCACTTGCTTCTCACCTGGCTCTTCATTCTCTCCTGCATA
GACAGCTGAGGCACCTTGTCTTACACAGTGCCTGGTTCTAGCCTCTTGCCTTTCCAGCTC
AGTACCCTTGGCTTTAGAGTCGCTAATAAACCTGTAGTGCCCATCTCT

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-116, - strand, RNAz p=0.819152
               

               
               197-381, - strand, RNAz p=0.925982
               

               
               548-767, - strand, RNAz p=0.988312

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-116, - strand, RNAz p=0.819152
               

               
               197-381, - strand, RNAz p=0.925982
               

               
               548-767, - strand, RNAz p=0.988312

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               583-646, + strand, RNAmicro p=0.992895

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               583-646, + strand, RNAmicro p=0.992895

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-767, gnl|bosTau2|chr3 (16217103-16217893)
               

               
               1-767, gnl|canFam2|chr17 (63473331-63474213)
               

               
               1-767, gnl|dasNov1|scaffold_81280 (2730-1853)
               

               
               1-767, gnl|echTel1|scaffold_316629 (48099-47221)
               

               
               1-767, gnl|hg17|chr1 (148127273-148128155)
               

               
               1-767, gnl|Hg17|chr1 (148128317-148127508)
               

               
               1-767, gnl|mm7|chr3 (94833721-94832902)
               

               
               1-767, gnl|Mm7|chr3 (94832735-94833535)
               

               
               1-767, gnl|monDom2|scaffold_44 (4527967-4528814)
               

               
               1-767, gnl|oryCun1|scaffold_203023 (14202-15089)
               

               
               1-767, gnl|panTro1|chr1 (129876980-129877862)
               

               
               1-767, gnl|rheMac2|chr1 (129773656-129774531)
               

               
               1-767, gnl|rn3|chr2 (189820765-189819944)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-767, gnl|bosTau2|chr3 (16217103-16217893)
               

               
               1-767, gnl|canFam2|chr17 (63473331-63474213)
               

               
               1-767, gnl|dasNov1|scaffold_81280 (2730-1853)
               

               
               1-767, gnl|echTel1|scaffold_316629 (48099-47221)
               

               
               1-767, gnl|hg17|chr1 (148127273-148128155)
               

               
               1-767, gnl|Hg17|chr1 (148128317-148127508)
               

               
               1-767, gnl|mm7|chr3 (94833721-94832902)
               

               
               1-767, gnl|Mm7|chr3 (94832735-94833535)
               

               
               1-767, gnl|monDom2|scaffold_44 (4527967-4528814)
               

               
               1-767, gnl|oryCun1|scaffold_203023 (14202-15089)
               

               
               1-767, gnl|panTro1|chr1 (129876980-129877862)
               

               
               1-767, gnl|rheMac2|chr1 (129773656-129774531)
               

               
               1-767, gnl|rn3|chr2 (189820765-189819944)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	1-116, - strand, RNAz p=0.819152
	197-381, - strand, RNAz p=0.925982
	548-767, - strand, RNAz p=0.988312

	1-767, gnl\|bosTau2\|chr3 (16217103-16217893)
	1-767, gnl\|canFam2\|chr17 (63473331-63474213)
	1-767, gnl\|dasNov1\|scaffold_81280 (2730-1853)
	1-767, gnl\|echTel1\|scaffold_316629 (48099-47221)
	1-767, gnl\|hg17\|chr1 (148127273-148128155)
	1-767, gnl\|Hg17\|chr1 (148128317-148127508)
	1-767, gnl\|mm7\|chr3 (94833721-94832902)
	1-767, gnl\|Mm7\|chr3 (94832735-94833535)
	1-767, gnl\|monDom2\|scaffold_44 (4527967-4528814)
	1-767, gnl\|oryCun1\|scaffold_203023 (14202-15089)
	1-767, gnl\|panTro1\|chr1 (129876980-129877862)
	1-767, gnl\|rheMac2\|chr1 (129773656-129774531)
	1-767, gnl\|rn3\|chr2 (189820765-189819944)