Non-Coding RNA Search

Ss1.1-reru09c_n7.5

Sequence:


               
               AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGCCTCGTGCCGAATTCGGCACGAGGTCATCAATTGAACCTTCC
AGTGAGGCCAAAGTTGGGCAGCCCATTCCAGGCCTTAGGAGAAAATCCACTTCGCAGCCA
AAATTGGTCCCAATTCCTTCCGGAAGAGAGGGAAGACTTATGACGTCCCTGGCGAGTTGG
CACCTATGACATCCTGGGAGGCGTCCTTGCTCATTACCCTCGGGCCGTGAAGGGCTTCGG
GTCCAGTTCACAGCTTCTCTGGACGCCCACAGTGCGCCTCTTATGCACTCCAGCACCCCC
ATCAGCTCCCTCTTCTCCTTCACCAGCCCCGCAGTGAAGAGACTGCTCGGCTGGAAGCAA
GGAGATGAAGAGGAAAAGTGGGCGGAGAAGGCGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGCCTCGTGCCGAATTCGGCACGAGGTCATCAATTGAACCTTCC
AGTGAGGCCAAAGTTGGGCAGCCCATTCCAGGCCTTAGGAGAAAATCCACTTCGCAGCCA
AAATTGGTCCCAATTCCTTCCGGAAGAGAGGGAAGACTTATGACGTCCCTGGCGAGTTGG
CACCTATGACATCCTGGGAGGCGTCCTTGCTCATTACCCTCGGGCCGTGAAGGGCTTCGG
GTCCAGTTCACAGCTTCTCTGGACGCCCACAGTGCGCCTCTTATGCACTCCAGCACCCCC
ATCAGCTCCCTCTTCTCCTTCACCAGCCCCGCAGTGAAGAGACTGCTCGGCTGGAAGCAA
GGAGATGAAGAGGAAAAGTGGGCGGAGAAGGCGGTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               310-456, - strand, RNAz p=0.995285

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               310-456, - strand, RNAz p=0.995285

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               363-478, - strand, RNAmicro p=1
               

               
               367-477, + strand, RNAmicro p=0.999292

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               363-478, - strand, RNAmicro p=1
               

               
               367-477, + strand, RNAmicro p=0.999292

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               336-452, DA293222 BRHIP2 Homo sapiens cDNA clone BRHIP2005335 5', mRNA 
(dbj|DA293222.1|), blast E-value=0, identity=97.44% 
               

               
               336-452, DA603678 IMR322 Homo sapiens cDNA clone IMR322000066 5', mRNA 
(dbj|DA603678.1|), blast E-value=0, identity=97.44% 
               

               
               336-452, DA715051 NT2RI2 Homo sapiens cDNA clone NT2RI2022207 5', mRNA 
(dbj|DA715051.1|), blast E-value=0, identity=97.44% 
               

               
               336-452, DA756136 NT2RP8 Homo sapiens cDNA clone NT2RP8002781 5', mRNA 
(dbj|DA756136.1|), blast E-value=0, identity=97.44% 
               

               
               336-452, DB501041 RIKEN full-length enriched human cDNA library, 
(dbj|DB501041.1|), blast E-value=0, identity=97.44% 
               

               
               337-452, 4126813 BARC 8BOV Bos taurus cDNA clone 8BOV_43B24 5', mRNA 
(gb|CN792001.1|), blast E-value=0, identity=99.14%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               336-452, DA293222 BRHIP2 Homo sapiens cDNA clone BRHIP2005335 5', mRNA 
(dbj|DA293222.1|), blast E-value=0, identity=97.44% 
               

               
               336-452, DA603678 IMR322 Homo sapiens cDNA clone IMR322000066 5', mRNA 
(dbj|DA603678.1|), blast E-value=0, identity=97.44% 
               

               
               336-452, DA715051 NT2RI2 Homo sapiens cDNA clone NT2RI2022207 5', mRNA 
(dbj|DA715051.1|), blast E-value=0, identity=97.44% 
               

               
               336-452, DA756136 NT2RP8 Homo sapiens cDNA clone NT2RP8002781 5', mRNA 
(dbj|DA756136.1|), blast E-value=0, identity=97.44% 
               

               
               336-452, DB501041 RIKEN full-length enriched human cDNA library, 
(dbj|DB501041.1|), blast E-value=0, identity=97.44% 
               

               
               337-452, 4126813 BARC 8BOV Bos taurus cDNA clone 8BOV_43B24 5', mRNA 
(gb|CN792001.1|), blast E-value=0, identity=99.14%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               128-456, gnl|bosTau2|chr11 (79658625-79658967)
               

               
               128-456, gnl|Hg17|chr13 (36352016-36351713)
               

               
               128-456, gnl|Mm7|chr3 (54911362-54911683)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               128-456, gnl|bosTau2|chr11 (79658625-79658967)
               

               
               128-456, gnl|Hg17|chr13 (36352016-36351713)
               

               
               128-456, gnl|Mm7|chr3 (54911362-54911683)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eru (0.120048)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)
               

               
               cty (0.10408)

	363-478, - strand, RNAmicro p=1
	367-477, + strand, RNAmicro p=0.999292

	336-452, DA293222 BRHIP2 Homo sapiens cDNA clone BRHIP2005335 5', mRNA (dbj\|DA293222.1\|), blast E-value=0, identity=97.44%
	336-452, DA603678 IMR322 Homo sapiens cDNA clone IMR322000066 5', mRNA (dbj\|DA603678.1\|), blast E-value=0, identity=97.44%
	336-452, DA715051 NT2RI2 Homo sapiens cDNA clone NT2RI2022207 5', mRNA (dbj\|DA715051.1\|), blast E-value=0, identity=97.44%
	336-452, DA756136 NT2RP8 Homo sapiens cDNA clone NT2RP8002781 5', mRNA (dbj\|DA756136.1\|), blast E-value=0, identity=97.44%
	336-452, DB501041 RIKEN full-length enriched human cDNA library, (dbj\|DB501041.1\|), blast E-value=0, identity=97.44%
	337-452, 4126813 BARC 8BOV Bos taurus cDNA clone 8BOV_43B24 5', mRNA (gb\|CN792001.1\|), blast E-value=0, identity=99.14%

	128-456, gnl\|bosTau2\|chr11 (79658625-79658967)
	128-456, gnl\|Hg17\|chr13 (36352016-36351713)
	128-456, gnl\|Mm7\|chr3 (54911362-54911683)