Non-Coding RNA Search

Ss1.1-reru10c_b11.5

Sequence:


               
               CTGTGCCCGGAGTACAGAGGGTGGGATCCCTGCCCTTGAGGAGCTGGCAGGCGTCAGAAA
TGAGCACTAAACCAGCAGCTGCACCAGGGTCCATAACGGGGCGATGCGCCATGCGATTGC
CAGACGGGCCAAGGCCCTGTGAGGAGGGACCCTGAAGACAGGCAGGAGTCAGCAGGGCAG
TGAGGGGAGGAGAGGGAATTTCCTAGGCAGAGAAGTAGCATCACTGTCCCCACTTAACAG
AAGGGGAAACTGAGGCTCAGAGAGTGCGAGTGAATTAGCAGTGGAGTGTGGATTGGGTCT
TGTCAAGTCTTCCCAAGGGACAGCAGTGACAGGAGAGGACCCCAGATAATTGAGTGACAG
CTGCACGTTGCTGGCTTCAATTTTCCACATCTGGGCAAAGGGCTCTATCTGGTTCTCTCC
CCCGGGGGACCCAGGTGGGGACAGGATGGGGTCACGGTGTCTGCCAGGCTGAGCAGTGGA
ACCTGTACCAGACCAGAGGTTGGCAAAGCAAGTAAGGGTGGGGGTGGGCGCGGCTGCATT
TCTAGCAGAGAGAAGTTCTGTGCCCACACAGCATGCTGGGAGAAGTCCTCCCCTTCACCC
ACTCCCCACCAAAACCCTCCCTTTCTGATGGGCACTGGGAGACCTCAGGGTGCTGCCCAT
CTGTTCCCCTGGGCACCAACCAGCTGCTGGTGATGCTGGGCTAGAGGGCAGGATACCATT
TAAGCTTCACCCAACCCTTGAGTATTTAGTACAGAAGCTCCTTGCCCCCCATAATGGGAA
CGTTTACAAGACTGTGCCAGGGGCAGGGGGTGCTGACTCTTGCCACTTGGCACTCCCCGC
TCGTCCTGGGGTGCCGTCCAGGCAGGATCGCGTGGTCAGGCTGTGCGGGTGGTAGGATTG
AGAAACAGCATGAGAGATTGGAGGGCAGGGTTTGACTGATACCCAGAGCTCCTGACTCCC
TGACTGGGCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTGCCCGGAGTACAGAGGGTGGGATCCCTGCCCTTGAGGAGCTGGCAGGCGTCAGAAA
TGAGCACTAAACCAGCAGCTGCACCAGGGTCCATAACGGGGCGATGCGCCATGCGATTGC
CAGACGGGCCAAGGCCCTGTGAGGAGGGACCCTGAAGACAGGCAGGAGTCAGCAGGGCAG
TGAGGGGAGGAGAGGGAATTTCCTAGGCAGAGAAGTAGCATCACTGTCCCCACTTAACAG
AAGGGGAAACTGAGGCTCAGAGAGTGCGAGTGAATTAGCAGTGGAGTGTGGATTGGGTCT
TGTCAAGTCTTCCCAAGGGACAGCAGTGACAGGAGAGGACCCCAGATAATTGAGTGACAG
CTGCACGTTGCTGGCTTCAATTTTCCACATCTGGGCAAAGGGCTCTATCTGGTTCTCTCC
CCCGGGGGACCCAGGTGGGGACAGGATGGGGTCACGGTGTCTGCCAGGCTGAGCAGTGGA
ACCTGTACCAGACCAGAGGTTGGCAAAGCAAGTAAGGGTGGGGGTGGGCGCGGCTGCATT
TCTAGCAGAGAGAAGTTCTGTGCCCACACAGCATGCTGGGAGAAGTCCTCCCCTTCACCC
ACTCCCCACCAAAACCCTCCCTTTCTGATGGGCACTGGGAGACCTCAGGGTGCTGCCCAT
CTGTTCCCCTGGGCACCAACCAGCTGCTGGTGATGCTGGGCTAGAGGGCAGGATACCATT
TAAGCTTCACCCAACCCTTGAGTATTTAGTACAGAAGCTCCTTGCCCCCCATAATGGGAA
CGTTTACAAGACTGTGCCAGGGGCAGGGGGTGCTGACTCTTGCCACTTGGCACTCCCCGC
TCGTCCTGGGGTGCCGTCCAGGCAGGATCGCGTGGTCAGGCTGTGCGGGTGGTAGGATTG
AGAAACAGCATGAGAGATTGGAGGGCAGGGTTTGACTGATACCCAGAGCTCCTGACTCCC
TGACTGGGCTGG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               275-387, - strand, RNAz p=0.513404
               

               
               743-881, + strand, RNAz p=0.99995

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               275-387, - strand, RNAz p=0.513404
               

               
               743-881, + strand, RNAz p=0.99995

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_004711, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_004711, +

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               2-716, gnl|bosTau2|chr5 (69783917-69784607)
               

               
               2-716, gnl|Hg17|chr22 (38104203-38104797)
               


               
               743-960, gnl|bosTau2|chr5 (69784612-69784835)
               

               
               743-960, gnl|Hg17|chr22 (38104823-38105067)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-716, gnl|bosTau2|chr5 (69783917-69784607)
               

               
               2-716, gnl|Hg17|chr22 (38104203-38104797)
               


               
               743-960, gnl|bosTau2|chr5 (69784612-69784835)
               

               
               743-960, gnl|Hg17|chr22 (38104823-38105067)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mcp (0.170648)
               

               
               hyp (0.142837)
               

               
               eru (0.120048)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               hyp (0.142837)
               

               
               eru (0.120048)

	275-387, - strand, RNAz p=0.513404
	743-881, + strand, RNAz p=0.99995

	2-716, gnl\|bosTau2\|chr5 (69783917-69784607)
	2-716, gnl\|Hg17\|chr22 (38104203-38104797)

	743-960, gnl\|bosTau2\|chr5 (69784612-69784835)
	743-960, gnl\|Hg17\|chr22 (38104823-38105067)