Non-Coding RNA Search

Ss1.1-reru10c_l11.5

Sequence:


               
               GGCAAGTCTGGGAGATGCCTTGGGTCACCTGGCCTTTGCCTATTTCCAGGCGGGGAATGT
TTCGTGTGCCCTCAGCCTCTCCCGAGAGTTTCTTCTCTACAGCCCAGACAATAAGAGGAT
GGCCAGGGAATGTCCTGAAATATGAAAAGCTCTTGGCAGAGAGTGCCAGCCAGGCTGTGG
CTGAGACTGTCATCCAAAGGCCCAACATACCCCACCTGCAGACCAGGGACACCTACGAGG
GGTTATGTCAGACCCTGGGTTCCCAGCCCACTCACTACCAGATCCCCAGCCTCTACTGTT
CCTACGAGACCAGTTCCAGTCCCTACCTGCTGCTCCAGCCCATCCGGAAGGAGGTCATCC
ACCTGGAGCCCTACGTTGTCCTGTACCACGACTTTGTCACCGACGCCGAGGCTCAGAAAA
TTAGAGGGCTTGCAGAACCGTGGCTGCAGAGATCCGTGGTGGCATCGGGCGAGAAGCAGT
TACCAGTGGAGTACCGCATCAGCAAAAGCGCCTGGCTGAAGGACACTGTTGATCCAATGC
TGGTGACCCTCGACCATCGCATTGCCGCCCTCACAGGCCTTGACGTCCAGCCTCCCTATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAAGTCTGGGAGATGCCTTGGGTCACCTGGCCTTTGCCTATTTCCAGGCGGGGAATGT
TTCGTGTGCCCTCAGCCTCTCCCGAGAGTTTCTTCTCTACAGCCCAGACAATAAGAGGAT
GGCCAGGGAATGTCCTGAAATATGAAAAGCTCTTGGCAGAGAGTGCCAGCCAGGCTGTGG
CTGAGACTGTCATCCAAAGGCCCAACATACCCCACCTGCAGACCAGGGACACCTACGAGG
GGTTATGTCAGACCCTGGGTTCCCAGCCCACTCACTACCAGATCCCCAGCCTCTACTGTT
CCTACGAGACCAGTTCCAGTCCCTACCTGCTGCTCCAGCCCATCCGGAAGGAGGTCATCC
ACCTGGAGCCCTACGTTGTCCTGTACCACGACTTTGTCACCGACGCCGAGGCTCAGAAAA
TTAGAGGGCTTGCAGAACCGTGGCTGCAGAGATCCGTGGTGGCATCGGGCGAGAAGCAGT
TACCAGTGGAGTACCGCATCAGCAAAAGCGCCTGGCTGAAGGACACTGTTGATCCAATGC
TGGTGACCCTCGACCATCGCATTGCCGCCCTCACAGGCCTTGACGTCCAGCCTCCCTATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               150-266, - strand, RNAz p=0.625044

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               150-266, - strand, RNAz p=0.625044

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               117-245, - strand, RNAmicro p=0.95348

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               117-245, - strand, RNAmicro p=0.95348

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AL833965, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AL833965, -

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               102-266, gnl|bosTau2|chr15 (34166439-34166276)
               

               
               102-266, gnl|canFam2|chr21 (27019391-27019204)
               

               
               102-266, gnl|dasNov1|scaffold_297791 (587-774)
               

               
               102-266, gnl|echTel1|scaffold_311394 (119771-119958)
               

               
               102-266, gnl|fr1|chrUn (15491708-15491532)
               

               
               102-266, gnl|hg17|chr11 (73674908-73675095)
               

               
               102-266, gnl|Hg17|chr11 (73675084-73674921)
               

               
               102-266, gnl|loxAfr1|scaffold_16570 (6158-5971)
               

               
               102-266, gnl|mm7|chr7 (96351920-96351733)
               

               
               102-266, gnl|Mm7|chr7 (96351742-96351905)
               

               
               102-266, gnl|monDom2|scaffold_74 (3164375-3164188)
               

               
               102-266, gnl|oryCun1|scaffold_68511 (474-287)
               

               
               102-266, gnl|panTro1|chr9 (74959283-74959470)
               

               
               102-266, gnl|rn3|chr1 (157784591-157784404)
               

               
               102-266, gnl|tetNig1|chr16 (4039840-4040012)
               

               
               102-266, gnl|xenTro1|scaffold_1234 (143896-144087)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               102-266, gnl|bosTau2|chr15 (34166439-34166276)
               

               
               102-266, gnl|canFam2|chr21 (27019391-27019204)
               

               
               102-266, gnl|dasNov1|scaffold_297791 (587-774)
               

               
               102-266, gnl|echTel1|scaffold_311394 (119771-119958)
               

               
               102-266, gnl|fr1|chrUn (15491708-15491532)
               

               
               102-266, gnl|hg17|chr11 (73674908-73675095)
               

               
               102-266, gnl|Hg17|chr11 (73675084-73674921)
               

               
               102-266, gnl|loxAfr1|scaffold_16570 (6158-5971)
               

               
               102-266, gnl|mm7|chr7 (96351920-96351733)
               

               
               102-266, gnl|Mm7|chr7 (96351742-96351905)
               

               
               102-266, gnl|monDom2|scaffold_74 (3164375-3164188)
               

               
               102-266, gnl|oryCun1|scaffold_68511 (474-287)
               

               
               102-266, gnl|panTro1|chr9 (74959283-74959470)
               

               
               102-266, gnl|rn3|chr1 (157784591-157784404)
               

               
               102-266, gnl|tetNig1|chr16 (4039840-4040012)
               

               
               102-266, gnl|xenTro1|scaffold_1234 (143896-144087)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	102-266, gnl\|bosTau2\|chr15 (34166439-34166276)
	102-266, gnl\|canFam2\|chr21 (27019391-27019204)
	102-266, gnl\|dasNov1\|scaffold_297791 (587-774)
	102-266, gnl\|echTel1\|scaffold_311394 (119771-119958)
	102-266, gnl\|fr1\|chrUn (15491708-15491532)
	102-266, gnl\|hg17\|chr11 (73674908-73675095)
	102-266, gnl\|Hg17\|chr11 (73675084-73674921)
	102-266, gnl\|loxAfr1\|scaffold_16570 (6158-5971)
	102-266, gnl\|mm7\|chr7 (96351920-96351733)
	102-266, gnl\|Mm7\|chr7 (96351742-96351905)
	102-266, gnl\|monDom2\|scaffold_74 (3164375-3164188)
	102-266, gnl\|oryCun1\|scaffold_68511 (474-287)
	102-266, gnl\|panTro1\|chr9 (74959283-74959470)
	102-266, gnl\|rn3\|chr1 (157784591-157784404)
	102-266, gnl\|tetNig1\|chr16 (4039840-4040012)
	102-266, gnl\|xenTro1\|scaffold_1234 (143896-144087)