Non-Coding RNA Search

Ss1.1-reru11c_f10.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTCACGCTTAGAAATGTAATGTGGGCACTGGTATGCACCC
CAGGGAGTCTAGAAATTCTACACAATGAAAAGCTCAAAAACAGCCTCCGAGCTGTGAACA
GCCGGGGCTGACTAGAGTACGGTGGACAGGCCTTCCCCAGGCTGAGCTGGGCCCCAGTCC
CTGTCAAGGTGAATGGCCCACTGTGCCGCCTGCGGCCTGGCCCGTGCCCCAGGCGGGAAT
CGTTCATGTAAAACCAGCTCCCGTGGGCACCCCTGCCCCCACGTAGACCCGGAGGCAGAC
TCAGGGCGCGCCCTCGGCCAGGCGGGCCAGGCCCTCCCGCAGCTCACTCAGCTCAAAGAG
CCTGACGTCCAGCAGCTGCGCGGCCCGGCCCACCTCGGCCCGTGCCCGCTCCCGCTCTAC
CCGAGCCTCCTCCAGGCTGCGCTCAGTTGCCCGCAGCTGGTGCTCCAGTTCCGCGTTTCG
GGTCTCCAGGTCCTGCACCTTCTGCTGTGTCTCCTCACGTTCGGTGGTGTCTGGTGCCTC
TCGGGTCCCACCAGTCTGGCTCTTCAGCGTCTGGATCTCCTGGTCCTTGGTTTGCACTAG
TGCCTCCAGTTGCTCCAGAGACTGGCCCGGCCCCTCCTTCTCAGTGACTGTGGGTGGCTC
AGTGGCAGCCTGGGCCTCCAGTTCAGCCACCCGCTGCCGCAGCCTGTCGGCCTCTGCGCG
CTGGGCCTCCAGCTGCTGCCTCCACTGGGCGGCGGCGGCGTTGGCCTCTCGAAGGGCGCC
CGCCAACTTGTTGTTACTGTCCTGCAGCGCGAAGAACTCGGCCTCCCACTGCACCTCGCC
CACCGAGCCCTCGGACAGCATCTTCTTGAGCCTCTCACGCTCAGTGGGGCCCGGGGCGTC
CGCGCTCTGGCTGCGGAATAGCTTCTCATCGCCGGGGCCGTTGGCGCTGACGAGGGGGCT
CGGGGGCACCTGGTGGGCAGTAAGCCCCAGAGCTGGACTGGTGAGCTCCCCCCCATCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTCACGCTTAGAAATGTAATGTGGGCACTGGTATGCACCC
CAGGGAGTCTAGAAATTCTACACAATGAAAAGCTCAAAAACAGCCTCCGAGCTGTGAACA
GCCGGGGCTGACTAGAGTACGGTGGACAGGCCTTCCCCAGGCTGAGCTGGGCCCCAGTCC
CTGTCAAGGTGAATGGCCCACTGTGCCGCCTGCGGCCTGGCCCGTGCCCCAGGCGGGAAT
CGTTCATGTAAAACCAGCTCCCGTGGGCACCCCTGCCCCCACGTAGACCCGGAGGCAGAC
TCAGGGCGCGCCCTCGGCCAGGCGGGCCAGGCCCTCCCGCAGCTCACTCAGCTCAAAGAG
CCTGACGTCCAGCAGCTGCGCGGCCCGGCCCACCTCGGCCCGTGCCCGCTCCCGCTCTAC
CCGAGCCTCCTCCAGGCTGCGCTCAGTTGCCCGCAGCTGGTGCTCCAGTTCCGCGTTTCG
GGTCTCCAGGTCCTGCACCTTCTGCTGTGTCTCCTCACGTTCGGTGGTGTCTGGTGCCTC
TCGGGTCCCACCAGTCTGGCTCTTCAGCGTCTGGATCTCCTGGTCCTTGGTTTGCACTAG
TGCCTCCAGTTGCTCCAGAGACTGGCCCGGCCCCTCCTTCTCAGTGACTGTGGGTGGCTC
AGTGGCAGCCTGGGCCTCCAGTTCAGCCACCCGCTGCCGCAGCCTGTCGGCCTCTGCGCG
CTGGGCCTCCAGCTGCTGCCTCCACTGGGCGGCGGCGGCGTTGGCCTCTCGAAGGGCGCC
CGCCAACTTGTTGTTACTGTCCTGCAGCGCGAAGAACTCGGCCTCCCACTGCACCTCGCC
CACCGAGCCCTCGGACAGCATCTTCTTGAGCCTCTCACGCTCAGTGGGGCCCGGGGCGTC
CGCGCTCTGGCTGCGGAATAGCTTCTCATCGCCGGGGCCGTTGGCGCTGACGAGGGGGCT
CGGGGGCACCTGGTGGGCAGTAAGCCCCAGAGCTGGACTGGTGAGCTCCCCCCCATCCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57101722|ref|XP_541929.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57101722|ref|XP_541929.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               83-462, - strand, RNAz p=0.99985

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               83-462, - strand, RNAz p=0.99985

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of Y18895, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of Y18895, -

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               83-557, gnl|bosTau2|chr7 (2365455-2365928)
               

               
               83-557, gnl|Hg17|chr19 (18901012-18901448)
               


               
               748-908, gnl|bosTau2|chr7 (2367379-2367539)
               

               
               748-908, gnl|canFam2|chr20 (47186815-47186609)
               

               
               748-908, gnl|danRer3|chr22 (30993094-30993266)
               

               
               748-908, gnl|echTel1|scaffold_242055 (1297-1091)
               

               
               748-908, gnl|fr1|chrUn (134120380-134120198)
               

               
               748-908, gnl|galGal2|chr28 (3072687-3072522)
               

               
               748-908, gnl|hg17|chr19 (18903781-18903987)
               

               
               748-908, gnl|Hg17|chr19 (18903782-18903942)
               

               
               748-908, gnl|mm7|chr8 (68746372-68746185)
               

               
               748-908, gnl|Mm7|chr8 (68746369-68746209)
               

               
               748-908, gnl|monDom2|scaffold_75 (1670893-1671089)
               

               
               748-908, gnl|oryCun1|scaffold_186223 (2810-2973)
               

               
               748-908, gnl|panTro1|chr20 (19975731-19975937)
               

               
               748-908, gnl|rheMac2|chr19 (18561288-18561494)
               

               
               748-908, gnl|rn3|chr16 (19619390-19619577)
               

               
               748-908, gnl|tetNig1|chr15 (4051216-4051036)
               

               
               748-908, gnl|xenTro1|scaffold_788 (91828-92031)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               83-557, gnl|bosTau2|chr7 (2365455-2365928)
               

               
               83-557, gnl|Hg17|chr19 (18901012-18901448)
               


               
               748-908, gnl|bosTau2|chr7 (2367379-2367539)
               

               
               748-908, gnl|canFam2|chr20 (47186815-47186609)
               

               
               748-908, gnl|danRer3|chr22 (30993094-30993266)
               

               
               748-908, gnl|echTel1|scaffold_242055 (1297-1091)
               

               
               748-908, gnl|fr1|chrUn (134120380-134120198)
               

               
               748-908, gnl|galGal2|chr28 (3072687-3072522)
               

               
               748-908, gnl|hg17|chr19 (18903781-18903987)
               

               
               748-908, gnl|Hg17|chr19 (18903782-18903942)
               

               
               748-908, gnl|mm7|chr8 (68746372-68746185)
               

               
               748-908, gnl|Mm7|chr8 (68746369-68746209)
               

               
               748-908, gnl|monDom2|scaffold_75 (1670893-1671089)
               

               
               748-908, gnl|oryCun1|scaffold_186223 (2810-2973)
               

               
               748-908, gnl|panTro1|chr20 (19975731-19975937)
               

               
               748-908, gnl|rheMac2|chr19 (18561288-18561494)
               

               
               748-908, gnl|rn3|chr16 (19619390-19619577)
               

               
               748-908, gnl|tetNig1|chr15 (4051216-4051036)
               

               
               748-908, gnl|xenTro1|scaffold_788 (91828-92031)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               nlu (0.383362)
               

               
               eru (0.240096)
               

               
               nep (0.183925)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.383362)
               

               
               eru (0.240096)
               

               
               nep (0.183925)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ecc (0.115035)

	83-557, gnl\|bosTau2\|chr7 (2365455-2365928)
	83-557, gnl\|Hg17\|chr19 (18901012-18901448)

	748-908, gnl\|bosTau2\|chr7 (2367379-2367539)
	748-908, gnl\|canFam2\|chr20 (47186815-47186609)
	748-908, gnl\|danRer3\|chr22 (30993094-30993266)
	748-908, gnl\|echTel1\|scaffold_242055 (1297-1091)
	748-908, gnl\|fr1\|chrUn (134120380-134120198)
	748-908, gnl\|galGal2\|chr28 (3072687-3072522)
	748-908, gnl\|hg17\|chr19 (18903781-18903987)
	748-908, gnl\|Hg17\|chr19 (18903782-18903942)
	748-908, gnl\|mm7\|chr8 (68746372-68746185)
	748-908, gnl\|Mm7\|chr8 (68746369-68746209)
	748-908, gnl\|monDom2\|scaffold_75 (1670893-1671089)
	748-908, gnl\|oryCun1\|scaffold_186223 (2810-2973)
	748-908, gnl\|panTro1\|chr20 (19975731-19975937)
	748-908, gnl\|rheMac2\|chr19 (18561288-18561494)
	748-908, gnl\|rn3\|chr16 (19619390-19619577)
	748-908, gnl\|tetNig1\|chr15 (4051216-4051036)
	748-908, gnl\|xenTro1\|scaffold_788 (91828-92031)

	nlu (0.383362)
	eru (0.240096)
	nep (0.183925)
	pla (0.133672)
	lyg (0.133103)
	ecc (0.115035)