Non-Coding RNA Search

Ss1.1-reru11c_j11.5

Sequence:


               
               TGAGCGAACAATCGAGTGTGTGTTCTCCCAACGGCGGCTTTTTAATGGTTAACCTTCGTC
TAATTTGTTTCTCCTACTGGCGTAGAGATCTCTNACTCGTGTGTGTGTATAGCTTTTGTT
CCGAGGGGTTGCGGGGAGGAAGGGGTGACGGCGTTCAGAGTCCTTTGTCTCGGATGAGGA
CGGAACTGCCGCTTGCGAGCCGGCGTCCGCGAGGGAGGCCCGTGGCGAGAGCTGCTAGGG
GCGACGCGCTACCCCGGCCGAGGGGACAGCACAGACCAGGGCCGAAGGCTCATTTGTGGC
TTTGACTCCCCGCCCCCACCCCCTATTTTCAGGGGTTGAGACTACATTTGAAATCTAAAC
TTGCAGTACGTAACTTCCTATTGAGCCCAGATACATTTTGTTTGGGTTTGGGTTTTTTTT
TTTTTTGCCTCTCCGCCCCCCTCTCCATTTCTTCCGTATTTGCTTTATGTGCGAGTGCCG
AAGTGGCCCTGGAATCGAGAATTTGGCTCTCCACCAAGCACCTTATCTTGCCACCTTAGC
CTTAAGAATGAGTATGAAGAAAACTACCCAGCCACCTCTATCCAGTGCAGTGAGAAGGAC
TGCAAGGAGGAGGCCATCGGGGAACAAGGAAAGGAACAGTCACTCCTGTAGCTCTGAGGC
CACCGTGCCTGGGAGGAGGTGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGCGAACAATCGAGTGTGTGTTCTCCCAACGGCGGCTTTTTAATGGTTAACCTTCGTC
TAATTTGTTTCTCCTACTGGCGTAGAGATCTCTNACTCGTGTGTGTGTATAGCTTTTGTT
CCGAGGGGTTGCGGGGAGGAAGGGGTGACGGCGTTCAGAGTCCTTTGTCTCGGATGAGGA
CGGAACTGCCGCTTGCGAGCCGGCGTCCGCGAGGGAGGCCCGTGGCGAGAGCTGCTAGGG
GCGACGCGCTACCCCGGCCGAGGGGACAGCACAGACCAGGGCCGAAGGCTCATTTGTGGC
TTTGACTCCCCGCCCCCACCCCCTATTTTCAGGGGTTGAGACTACATTTGAAATCTAAAC
TTGCAGTACGTAACTTCCTATTGAGCCCAGATACATTTTGTTTGGGTTTGGGTTTTTTTT
TTTTTTGCCTCTCCGCCCCCCTCTCCATTTCTTCCGTATTTGCTTTATGTGCGAGTGCCG
AAGTGGCCCTGGAATCGAGAATTTGGCTCTCCACCAAGCACCTTATCTTGCCACCTTAGC
CTTAAGAATGAGTATGAAGAAAACTACCCAGCCACCTCTATCCAGTGCAGTGAGAAGGAC
TGCAAGGAGGAGGCCATCGGGGAACAAGGAAAGGAACAGTCACTCCTGTAGCTCTGAGGC
CACCGTGCCTGGGAGGAGGTGGGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               295-412, - strand, RNAz p=0.975914

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               295-412, - strand, RNAz p=0.975914

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-670, gnl|bosTau2|chr3 (22057676-22058315)
               

               
               1-670, gnl|Hg17|chr1 (117241839-117242503)
               

               
               1-670, gnl|Mm7|chr3 (100837967-100837277)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-670, gnl|bosTau2|chr3 (22057676-22058315)
               

               
               1-670, gnl|Hg17|chr1 (117241839-117242503)
               

               
               1-670, gnl|Mm7|chr3 (100837967-100837277)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eep (0.122564)
               

               
               eru (0.120048)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               eru (0.120048)

	1-670, gnl\|bosTau2\|chr3 (22057676-22058315)
	1-670, gnl\|Hg17\|chr1 (117241839-117242503)
	1-670, gnl\|Mm7\|chr3 (100837967-100837277)