Non-Coding RNA Search

Ss1.1-reru12c_e5.5

Sequence:


               
               CGGGACTTGGCTGCCACTGGGGATGAATATAGCTCCTCTCCCGGCAGCCTGAGAATGGGA
AGGTCACGCTGACTCATGGACCTTCAGGGACAAGCCACCCAGGAGTTAGGGACAACCCAA
GGGGTTGCCGACCCTCTGGCATAACTGAGACATGTTTGGAAAGAGCGCAAGTTTCCTACT
GGAGATGAGCTTTAGGACCTTCCAATGCAGATGGTACAAGCATCTCTTCAGGGTCCCCTG
GGGCAGCTCGTACATGAGGCCCCTCTGGGGAGGGGCAGGGGGCTCCAGACAGTAAGCATA
TGGCACTTAAAGCAAACAGCAGATGGCACCAACTTTTAAAGGTGACTCTTTGTTACTTAA
TCAATGGCTTCATCTCTAAATTATATTTTTACAGATATGCACCTATGCAACTTAACGTGG
CTCTTCTAAGCAGGTGAGGACTTCCTCCTCAATGCTCTATAAAAATTATTTGTGTTCTAT
ATAGTGAGTTTTACCAGTAAATGTGGCTTAATATTTTAATTCTTAGAATGTGTCTTCTCT
ATGTGATGCAACTAAATTCTGTTTTGTTTGTGGAATGACTAGCACAGGCCAACTCCCTCT
CCCCTCACTTAACAAAAGACCAATGAGCTGTTAATCGAGCTGTTATCTCCATGGTATTAC
TTGCTAAATGCACTGATTTCATAAGTATGTGGAATCCTTTTTCTTTGGAATCTGTATATC
ATATATAAGACTGAATCTACTTAATAAACACTGAATAACAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGACTTGGCTGCCACTGGGGATGAATATAGCTCCTCTCCCGGCAGCCTGAGAATGGGA
AGGTCACGCTGACTCATGGACCTTCAGGGACAAGCCACCCAGGAGTTAGGGACAACCCAA
GGGGTTGCCGACCCTCTGGCATAACTGAGACATGTTTGGAAAGAGCGCAAGTTTCCTACT
GGAGATGAGCTTTAGGACCTTCCAATGCAGATGGTACAAGCATCTCTTCAGGGTCCCCTG
GGGCAGCTCGTACATGAGGCCCCTCTGGGGAGGGGCAGGGGGCTCCAGACAGTAAGCATA
TGGCACTTAAAGCAAACAGCAGATGGCACCAACTTTTAAAGGTGACTCTTTGTTACTTAA
TCAATGGCTTCATCTCTAAATTATATTTTTACAGATATGCACCTATGCAACTTAACGTGG
CTCTTCTAAGCAGGTGAGGACTTCCTCCTCAATGCTCTATAAAAATTATTTGTGTTCTAT
ATAGTGAGTTTTACCAGTAAATGTGGCTTAATATTTTAATTCTTAGAATGTGTCTTCTCT
ATGTGATGCAACTAAATTCTGTTTTGTTTGTGGAATGACTAGCACAGGCCAACTCCCTCT
CCCCTCACTTAACAAAAGACCAATGAGCTGTTAATCGAGCTGTTATCTCCATGGTATTAC
TTGCTAAATGCACTGATTTCATAAGTATGTGGAATCCTTTTTCTTTGGAATCTGTATATC
ATATATAAGACTGAATCTACTTAATAAACACTGAATAACAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               3-762, gnl|bosTau2|chr13 (42752493-42753230)
               

               
               3-762, gnl|Hg17|chr20 (30495282-30494528)
               

               
               3-762, gnl|Mm7|chr2 (153149022-153148323)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-762, gnl|bosTau2|chr13 (42752493-42753230)
               

               
               3-762, gnl|Hg17|chr20 (30495282-30494528)
               

               
               3-762, gnl|Mm7|chr2 (153149022-153148323)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               hyp (0.142837)
               

               
               ret (0.128733)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               hyp (0.142837)
               

               
               ret (0.128733)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	3-762, gnl\|bosTau2\|chr13 (42752493-42753230)
	3-762, gnl\|Hg17\|chr20 (30495282-30494528)
	3-762, gnl\|Mm7\|chr2 (153149022-153148323)

	ece (0.229305)
	fcc (0.197785)
	aor (0.195274)
	mgm (0.180343)
	rec (0.17307)
	hyp (0.142837)
	ret (0.128733)
	eru (0.120048)
	ecc (0.115035)
	spc (0.113366)