Non-Coding RNA Search

Ss1.1-reru12c_l4.5

Sequence:


               
               CAGCAGCTGGTTACTGCATTTCTCCATGTGGCAGACAGAGCAAAGCCACAATGCTTTCTC
TGCTGGATTAAAGACAGCCCGCAGACCAGAACTTCCACTATACTACTTAAAATTACATAG
GTGGCTTGTCAAATTCAATTGATTAGTGCTTCAGAAGAAAAAGAAGTTCCATATTACAGC
TTGGATTCAACGGTCCAAAACAAAAATGCAGTTGCCATTAAAGTCACAGACGAACAAACT
TCTACACTGATTTTTAAAGGCAAGATTAAGAGCAGCCAAGCTTCTGGGTTTGCTTTATCA
ACAGATGCAAAAAGACGTCATACACGCTCATTGCAAAATGAAGGCTCTGATCTGGACCCT
AAGTGTGCTTTTCTTCCTACTAATGGGCATTGGACAATGCAGAGGAGGACAGTTCAAAAT
AAAAAAAATAACCCAGAGGAGATACCCTCGAGCCACAGATGGTAAAGAGGAAGTAAAGAA
GTGTGCATACACATTCCTGGTGCCTGAACAAAAAATAACAGGGCCCATCTGTGTCAATAC
CAAAGGGCAAGACGCGGGCACGATTAAAGACATGATCACCAGGATGGACCTTGAAAACCT
GAAGGACGTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCAGCTGGTTACTGCATTTCTCCATGTGGCAGACAGAGCAAAGCCACAATGCTTTCTC
TGCTGGATTAAAGACAGCCCGCAGACCAGAACTTCCACTATACTACTTAAAATTACATAG
GTGGCTTGTCAAATTCAATTGATTAGTGCTTCAGAAGAAAAAGAAGTTCCATATTACAGC
TTGGATTCAACGGTCCAAAACAAAAATGCAGTTGCCATTAAAGTCACAGACGAACAAACT
TCTACACTGATTTTTAAAGGCAAGATTAAGAGCAGCCAAGCTTCTGGGTTTGCTTTATCA
ACAGATGCAAAAAGACGTCATACACGCTCATTGCAAAATGAAGGCTCTGATCTGGACCCT
AAGTGTGCTTTTCTTCCTACTAATGGGCATTGGACAATGCAGAGGAGGACAGTTCAAAAT
AAAAAAAATAACCCAGAGGAGATACCCTCGAGCCACAGATGGTAAAGAGGAAGTAAAGAA
GTGTGCATACACATTCCTGGTGCCTGAACAAAAAATAACAGGGCCCATCTGTGTCAATAC
CAAAGGGCAAGACGCGGGCACGATTAAAGACATGATCACCAGGATGGACCTTGAAAACCT
GAAGGACGTGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56205247|emb|CAI21921.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56205247|emb|CAI21921.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               3-118, + strand, RNAz p=0.680452

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-118, + strand, RNAz p=0.680452

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_004673, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_004673, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-314, gnl|bosTau2|chr16 (42554935-42554623)
               

               
               3-314, gnl|Hg17|chr1 (175571844-175571533)
               

               
               3-314, gnl|Mm7|chr1 (156801557-156801837)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-314, gnl|bosTau2|chr16 (42554935-42554623)
               

               
               3-314, gnl|Hg17|chr1 (175571844-175571533)
               

               
               3-314, gnl|Mm7|chr1 (156801557-156801837)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

	3-314, gnl\|bosTau2\|chr16 (42554935-42554623)
	3-314, gnl\|Hg17\|chr1 (175571844-175571533)
	3-314, gnl\|Mm7\|chr1 (156801557-156801837)