Non-Coding RNA Search

Ss1.1-reru12c_p8.5

Sequence:


               
               GCCTGGCCTACGGGAGGCGCGTTCCTTGCTCCTGTTCGCCGCTGCTCTGGCTGGTGCCGC
CGCCCTGGGCTGCACTGGGTTGGTGGCCTGCGCCGGCCATCTCGCCGCAGTCTGACCCCG
CCCGGGAGCCACCTTCGCCGCCTGAACCGTAGAACCCGAGCCCGTCCTCCGCTCGGGCTC
TGCTGGAGAGTTGGGTGACCCGGGTACCGCCCAGAAGCCACTCCCACCGCCTCCGGTTCA
CAGCACTCCGAGCGTGGGTCTCCGCCCCAGCTCTAGCCCTGTGATCCGGGCCCGCCCCCT
GGCGGCCGGGGAGGGAGGAGTGGGGGCCGCGGCTCAAGCGAGACTTGTAGCCTGGAAAGC
TGCTGCTGCTGAGGGGATCGCGGACCTCTCTCTTCCTCCGGCCTGGCTGAGGCCCCCCGA
CGGGGGTGGGCAAACTGCGACCTAGAGAAGGCAGCAGGGCCAGGGTTCAAGCAACTATTT
TTCACCTTCCAGGCACCCCCACCCACATCGGCTCGCAAACCACAAATCCTCTGTGTGCAT
GAGGCCCTGCCCTCCCAGGAAAGCTCTCTACGCGGCGAACGTCTAGCGCGAGCTCCGCCT
GCTCTCTGGAGAACCTTTTGCTTTTGACAGCCCCGCTTTTTCGGGGACTTTCGTGCCTTC
CTCCTCACGTGCGTTGCTCTCGGAGCCACAGCCGGCTCCGCCCGCCTCAGCAGTGTGGGT
ATTTATTGACCTGTCCTCCAACCCGCTGACAGGCTCCAGGATCCCGGCACCCTAATCCAC
GTTTTGGATGCACTGAGACCCCGACATTCCTCGGTATTTATTGTCTTTCCCCACCTAGGA
CCCCACCCCCGATCCTCGCAAATAAAAGGCCCTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTGGCCTACGGGAGGCGCGTTCCTTGCTCCTGTTCGCCGCTGCTCTGGCTGGTGCCGC
CGCCCTGGGCTGCACTGGGTTGGTGGCCTGCGCCGGCCATCTCGCCGCAGTCTGACCCCG
CCCGGGAGCCACCTTCGCCGCCTGAACCGTAGAACCCGAGCCCGTCCTCCGCTCGGGCTC
TGCTGGAGAGTTGGGTGACCCGGGTACCGCCCAGAAGCCACTCCCACCGCCTCCGGTTCA
CAGCACTCCGAGCGTGGGTCTCCGCCCCAGCTCTAGCCCTGTGATCCGGGCCCGCCCCCT
GGCGGCCGGGGAGGGAGGAGTGGGGGCCGCGGCTCAAGCGAGACTTGTAGCCTGGAAAGC
TGCTGCTGCTGAGGGGATCGCGGACCTCTCTCTTCCTCCGGCCTGGCTGAGGCCCCCCGA
CGGGGGTGGGCAAACTGCGACCTAGAGAAGGCAGCAGGGCCAGGGTTCAAGCAACTATTT
TTCACCTTCCAGGCACCCCCACCCACATCGGCTCGCAAACCACAAATCCTCTGTGTGCAT
GAGGCCCTGCCCTCCCAGGAAAGCTCTCTACGCGGCGAACGTCTAGCGCGAGCTCCGCCT
GCTCTCTGGAGAACCTTTTGCTTTTGACAGCCCCGCTTTTTCGGGGACTTTCGTGCCTTC
CTCCTCACGTGCGTTGCTCTCGGAGCCACAGCCGGCTCCGCCCGCCTCAGCAGTGTGGGT
ATTTATTGACCTGTCCTCCAACCCGCTGACAGGCTCCAGGATCCCGGCACCCTAATCCAC
GTTTTGGATGCACTGAGACCCCGACATTCCTCGGTATTTATTGTCTTTCCCCACCTAGGA
CCCCACCCCCGATCCTCGCAAATAAAAGGCCCTTTC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-874, gnl|bosTau2|chr18 (38193154-38194025)
               

               
               1-874, gnl|Hg17|chr19 (50965730-50964828)
               

               
               1-874, gnl|Mm7|chr7 (16775332-16776182)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-874, gnl|bosTau2|chr18 (38193154-38194025)
               

               
               1-874, gnl|Hg17|chr19 (50965730-50964828)
               

               
               1-874, gnl|Mm7|chr7 (16775332-16776182)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

Help | Less info


               
               nms (0.427716)
               

               
               csp (0.322373)
               

               
               hlv (0.278513)
               

               
               eru (0.240096)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.427716)
               

               
               csp (0.322373)
               

               
               hlv (0.278513)
               

               
               eru (0.240096)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)

	1-874, gnl\|bosTau2\|chr18 (38193154-38194025)
	1-874, gnl\|Hg17\|chr19 (50965730-50964828)
	1-874, gnl\|Mm7\|chr7 (16775332-16776182)

	nms (0.427716)
	csp (0.322373)
	hlv (0.278513)
	eru (0.240096)
	ill (0.175593)
	mcp (0.170648)
	eye (0.170503)
	cag (0.151194)
	hyp (0.142837)
	cly (0.120642)
	ecc (0.115035)