Non-Coding RNA Search

Ss1.1-reru13c_o6.5

Sequence:


               
               AAGGCCTTGGGGCGGGTGGTGGGGGTGGGGGGTGTCTTCTGCTCAGTTTCCATCGTGGAG
TTGAACTCCTTGCTGGACCCCCTCCATCTTGGGGCTGACAGCCAAAGACTGGGGCTCCTG
TGCTCAGATGTTTGGCATCCTCCTAAAAGCACTGGAAGCCAGAACTGCCAGCATAAGTGG
CTTGCAGCGGGCTGGGAAAAGCACCATTCCTTCCTGAACGCTCTGTCTCCAGCCTCACTG
CAATCTCAGAACAGACAAATCATGAATGAGCTAGAATGCTGCAAGAATATGCACATAATA
AATGTATATCTAAATATAGAAATATATATATTTAGAGAGAGAGCTTTCACCATGGCCAGC
AGCCGTGGGGACGACTTGGGTAACTCTTACCCGTGGCCAAAGGAAAGGGTTTGCCTGTCC
GAGTCCTGAGGTTGGGAAAGGCACTTGGCAGTGAACCTTTACTCTGGGTCGGCATCACCC
TGGTGAGGGGACGTGCTGCGGGGCCCTGGCAGGCAGCTCCTGCGGTCCTCCAGCCTGAGT
TGGGGTGGCAGGCGAGGGAGCCAGCAGGAAAGTGCCCCTTCGTGCTGGTCTGCTCTCCAT
CCGGGGCCCTGGGAGCAAAGGGCTGTGAGCCCCTGGTTTTTTGGCAGAGCCCCACCCCAG
AGCTCCTTTCACATCTGTTAATTAAGTGCAATAAATTTTTCTAGAAACGGCGAAGATGAC
TTCCAGGTGGCTCTTGCATCTTACAGCGTCGGGGTCGCCAGAACACCACTTGGTTTTATT
TTTCTAAGTGCATGTGACGTGATAGAGTGTGCGGGGCTCCGCCTCCTCCCCTGGGAGCTG
GCATTCCAGCGGGCCCCTCTCCCCTTTACCTTCCCTGGGGAAGAAGGCAAGGAGCAAACC
CCTTCTTCCCAGCCGGAGAGGGCGGAAGAGGCCATAGCCCATGGGCCTTATGTGCTTGTG
TGCGTGCGTGGGCCACCATTGGTGGGCCGGAGTGACATGGCGGGAGGGAAGCTGGGAATG
TATCCTTTTCAAACAAAATTAAATATTTTGAGATGAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGCCTTGGGGCGGGTGGTGGGGGTGGGGGGTGTCTTCTGCTCAGTTTCCATCGTGGAG
TTGAACTCCTTGCTGGACCCCCTCCATCTTGGGGCTGACAGCCAAAGACTGGGGCTCCTG
TGCTCAGATGTTTGGCATCCTCCTAAAAGCACTGGAAGCCAGAACTGCCAGCATAAGTGG
CTTGCAGCGGGCTGGGAAAAGCACCATTCCTTCCTGAACGCTCTGTCTCCAGCCTCACTG
CAATCTCAGAACAGACAAATCATGAATGAGCTAGAATGCTGCAAGAATATGCACATAATA
AATGTATATCTAAATATAGAAATATATATATTTAGAGAGAGAGCTTTCACCATGGCCAGC
AGCCGTGGGGACGACTTGGGTAACTCTTACCCGTGGCCAAAGGAAAGGGTTTGCCTGTCC
GAGTCCTGAGGTTGGGAAAGGCACTTGGCAGTGAACCTTTACTCTGGGTCGGCATCACCC
TGGTGAGGGGACGTGCTGCGGGGCCCTGGCAGGCAGCTCCTGCGGTCCTCCAGCCTGAGT
TGGGGTGGCAGGCGAGGGAGCCAGCAGGAAAGTGCCCCTTCGTGCTGGTCTGCTCTCCAT
CCGGGGCCCTGGGAGCAAAGGGCTGTGAGCCCCTGGTTTTTTGGCAGAGCCCCACCCCAG
AGCTCCTTTCACATCTGTTAATTAAGTGCAATAAATTTTTCTAGAAACGGCGAAGATGAC
TTCCAGGTGGCTCTTGCATCTTACAGCGTCGGGGTCGCCAGAACACCACTTGGTTTTATT
TTTCTAAGTGCATGTGACGTGATAGAGTGTGCGGGGCTCCGCCTCCTCCCCTGGGAGCTG
GCATTCCAGCGGGCCCCTCTCCCCTTTACCTTCCCTGGGGAAGAAGGCAAGGAGCAAACC
CCTTCTTCCCAGCCGGAGAGGGCGGAAGAGGCCATAGCCCATGGGCCTTATGTGCTTGTG
TGCGTGCGTGGGCCACCATTGGTGGGCCGGAGTGACATGGCGGGAGGGAAGCTGGGAATG
TATCCTTTTCAAACAAAATTAAATATTTTGAGATGAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               589-687, - strand, RNAz p=0.99169
               

               
               806-923, + strand, RNAz p=0.778438

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               589-687, - strand, RNAz p=0.99169
               

               
               806-923, + strand, RNAz p=0.778438

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_003216, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_003216, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               65-1059, gnl|bosTau2|chr5 (71225461-71226474)
               

               
               65-1059, gnl|Hg17|chr22 (40118803-40119830)
               

               
               65-1059, gnl|Mm7|chr15 (81910317-81911258)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               65-1059, gnl|bosTau2|chr5 (71225461-71226474)
               

               
               65-1059, gnl|Hg17|chr22 (40118803-40119830)
               

               
               65-1059, gnl|Mm7|chr15 (81910317-81911258)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               amn (0.417711)
               

               
               mas (0.210305)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               cki (0.165235)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ute (0.132784)
               

               
               eru (0.120048)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               mas (0.210305)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               cki (0.165235)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ute (0.132784)
               

               
               eru (0.120048)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	589-687, - strand, RNAz p=0.99169
	806-923, + strand, RNAz p=0.778438

	65-1059, gnl\|bosTau2\|chr5 (71225461-71226474)
	65-1059, gnl\|Hg17\|chr22 (40118803-40119830)
	65-1059, gnl\|Mm7\|chr15 (81910317-81911258)

	amn (0.417711)
	mas (0.210305)
	aor (0.195274)
	gul (0.177588)
	cki (0.165235)
	pty (0.142714)
	lnt (0.142308)
	hlv (0.139256)
	ute (0.132784)
	eru (0.120048)
	cty (0.10408)
	ldo (0.0970026)