Non-Coding RNA Search

Ss1.1-reru14c_n15.5

Sequence:


               
               TTATCACTGTTAGATTTGTAAAAAGTGGGTCAGTAAGAAAAACAAAAAGAAGGTCAACCT
ATGTAATTAAGAGAAAGACAAGAGGAATGTAATGATAGTGAAGACACCCATTTTTGTGCA
TTTCTGTTTTTTTACCCCAAAGAGGTACAGCACAAATTGCCAGTTAATACCGAAGGGATT
TCATTCATACAGTACTGGAAGGTTAGGGTTTTCTGCCATTCCCAAAGTGTTTATGGGATA
GAGCCTATTTAAGAAAACTTCCTTTTATGCCAGGTGGCTTAAATGGGGCTTCTCTTAATA
GGCCATCCTGTATTCCAAATGGGAAAGAAAACTTCTCAGGAAGCACCTCTTTGTGGCAAA
ACATCTAAAGCCTGAAAACCATTCACATATGGGTCTTGTAAGTAAACATTCTGCTCCGTG
ATACTTTGTGATTGGAGCTAATGACTGAATAGCTGCATGGCTGTTTTTCTTCCCTTTGAG
GATATTTTCTCTTGCATTATATTCAATGAAAACAAGGTCTTTGAAAATCCATGGCATTTT
TGCATGAGCTCTTGAGTCTAACGTTTGGCATCGTTTTGTAACATAACCCTTATTTCCAAG
ATAATAAGCACGGAGAAGACACTATCTTCAGCATATGGGTTGTGGCATTTCAGAATCTCC
TGGAGTGTTCACCTCAAAAGTCAATTCTATCCGGTCAATTCAGGCAACTCTCAATTACCC
AGACTCTAGGATTCTTTAGTGTCGCACTGTTTTTCAAGAGGTTGCAGCTCTGGTTCCATG
CTTGGCTAAGGTTAATATGTAAATTAATTTGCTGTGCCTGACCGAGTATAATGGTATTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATCACTGTTAGATTTGTAAAAAGTGGGTCAGTAAGAAAAACAAAAAGAAGGTCAACCT
ATGTAATTAAGAGAAAGACAAGAGGAATGTAATGATAGTGAAGACACCCATTTTTGTGCA
TTTCTGTTTTTTTACCCCAAAGAGGTACAGCACAAATTGCCAGTTAATACCGAAGGGATT
TCATTCATACAGTACTGGAAGGTTAGGGTTTTCTGCCATTCCCAAAGTGTTTATGGGATA
GAGCCTATTTAAGAAAACTTCCTTTTATGCCAGGTGGCTTAAATGGGGCTTCTCTTAATA
GGCCATCCTGTATTCCAAATGGGAAAGAAAACTTCTCAGGAAGCACCTCTTTGTGGCAAA
ACATCTAAAGCCTGAAAACCATTCACATATGGGTCTTGTAAGTAAACATTCTGCTCCGTG
ATACTTTGTGATTGGAGCTAATGACTGAATAGCTGCATGGCTGTTTTTCTTCCCTTTGAG
GATATTTTCTCTTGCATTATATTCAATGAAAACAAGGTCTTTGAAAATCCATGGCATTTT
TGCATGAGCTCTTGAGTCTAACGTTTGGCATCGTTTTGTAACATAACCCTTATTTCCAAG
ATAATAAGCACGGAGAAGACACTATCTTCAGCATATGGGTTGTGGCATTTCAGAATCTCC
TGGAGTGTTCACCTCAAAAGTCAATTCTATCCGGTCAATTCAGGCAACTCTCAATTACCC
AGACTCTAGGATTCTTTAGTGTCGCACTGTTTTTCAAGAGGTTGCAGCTCTGGTTCCATG
CTTGGCTAAGGTTAATATGTAAATTAATTTGCTGTGCCTGACCGAGTATAATGGTATTTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13242911|gb|AAB36089.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13242911|gb|AAB36089.2|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               212-370, - strand, RNAz p=0.982325

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               212-370, - strand, RNAz p=0.982325

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               60-840, gnl|bosTau2|chr6 (4370234-4369437)
               

               
               60-840, gnl|Hg17|chr4 (114734821-114734028)
               

               
               60-840, gnl|Mm7|chr3 (126679082-126679880)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               60-840, gnl|bosTau2|chr6 (4370234-4369437)
               

               
               60-840, gnl|Hg17|chr4 (114734821-114734028)
               

               
               60-840, gnl|Mm7|chr3 (126679082-126679880)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	60-840, gnl\|bosTau2\|chr6 (4370234-4369437)
	60-840, gnl\|Hg17\|chr4 (114734821-114734028)
	60-840, gnl\|Mm7\|chr3 (126679082-126679880)