Non-Coding RNA Search

Ss1.1-reru15c_l16.5

Sequence:


               
               TACACCTGACTCTGCCCAAGTTAAGCCCCAACCTGTGAGAGGAAAGCTGCTAACTCCCAG
CTACAGCCATGGGCCCCTGGCCCCCTGCTCTCCTGCTCAGCAGAGCCCCTCCCATCAGAG
ATTACGGGTACTTGCACTGGGGAGGTGGCTGCTGGCTGGCCCAAGCAGAGAGCTGAGGCA
TCCAAGAAATGTTCCATTGGTGGGAGAGGAGGTGTGAGGTGAGATGGAGCATTCCTTGTA
CTTCTGGCAGCACTGAATAGCCACTGAAGGGGGTTGGGGGGCAGAGTAGGTCCTGGGGCA
ACCCCTTTCTTATTCCCTCATGCCCCTTCTCCCCCATAGCCTATTTCTAAAGTCGCCTTT
TCTGTCAGATAAACCTCAAAACTTAATTTTATTTGAGATTTTTTTTTTTGCTTTTAAATA
AGAGGTGGATTGAAGAATATTTGAATTGACTTTATATTATGCATAAATATTTATATTTTA
TCTAAATAACTGCTCTGTAACAAACTTTGTGTTAGTCAAACATTTGGAACTGTTAGAGTG
GGGTGGGGGGCTGTTTTTCCCCATGGCAGTATTCCCCTAGTATTTAGATTTGTTTTACTG
TTGGAGGTTAGGTACACGGGGGAGTGAAACCTCAATTGTTCCTGCTTTGTGTTCCTCTCC
TAGCTCCATCTGTTTCCCTAGGGACCAGGCACTCGTAAGGTGGGGTGGAGTCCTAGCCTC
AGTTTGAAGTGGGGGGGCTGAAGGGGGGTGGGGGTAGGGCATGATCAAAGGGGCCATTTC
TCACTTTTCTTTCCTCATCTTCGCTGCCCCTTGAGCTAGATGGATTTTCTCCTCTTGACA
AGAGTATTTAATAGGGAAGGCAGGTTAAAAAAGTAAATAAAACCCACCCCCTGCCCATTT
GTTTCCCTTCCCCCATCAGTCTGGTAACAGGAAGAAACCACACCATCAACACCAAGTTTC
CATGTTCCTTTTACAACAAAAGGGACTTGACTTTTTATATAACCAAATGTGGTGTTTTAG
TGACTTTTTGATAATGTACAGTTTTTTGTGAATTTAAATTTATTTCTTTCTATATTTTTA
GGACCAATCTCATTTTTAATAAGGTTTAAAAAAGGAAAAAAAAAGTCTAGAGAAAAAAAT
TCCTGTTTTTGCCATGTGATGTTCCACAAGTGCAGCTGTAGAAAAGTGCTTGTCAGTTGA
ATAAAAACCACATTTGATAGAGAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACACCTGACTCTGCCCAAGTTAAGCCCCAACCTGTGAGAGGAAAGCTGCTAACTCCCAG
CTACAGCCATGGGCCCCTGGCCCCCTGCTCTCCTGCTCAGCAGAGCCCCTCCCATCAGAG
ATTACGGGTACTTGCACTGGGGAGGTGGCTGCTGGCTGGCCCAAGCAGAGAGCTGAGGCA
TCCAAGAAATGTTCCATTGGTGGGAGAGGAGGTGTGAGGTGAGATGGAGCATTCCTTGTA
CTTCTGGCAGCACTGAATAGCCACTGAAGGGGGTTGGGGGGCAGAGTAGGTCCTGGGGCA
ACCCCTTTCTTATTCCCTCATGCCCCTTCTCCCCCATAGCCTATTTCTAAAGTCGCCTTT
TCTGTCAGATAAACCTCAAAACTTAATTTTATTTGAGATTTTTTTTTTTGCTTTTAAATA
AGAGGTGGATTGAAGAATATTTGAATTGACTTTATATTATGCATAAATATTTATATTTTA
TCTAAATAACTGCTCTGTAACAAACTTTGTGTTAGTCAAACATTTGGAACTGTTAGAGTG
GGGTGGGGGGCTGTTTTTCCCCATGGCAGTATTCCCCTAGTATTTAGATTTGTTTTACTG
TTGGAGGTTAGGTACACGGGGGAGTGAAACCTCAATTGTTCCTGCTTTGTGTTCCTCTCC
TAGCTCCATCTGTTTCCCTAGGGACCAGGCACTCGTAAGGTGGGGTGGAGTCCTAGCCTC
AGTTTGAAGTGGGGGGGCTGAAGGGGGGTGGGGGTAGGGCATGATCAAAGGGGCCATTTC
TCACTTTTCTTTCCTCATCTTCGCTGCCCCTTGAGCTAGATGGATTTTCTCCTCTTGACA
AGAGTATTTAATAGGGAAGGCAGGTTAAAAAAGTAAATAAAACCCACCCCCTGCCCATTT
GTTTCCCTTCCCCCATCAGTCTGGTAACAGGAAGAAACCACACCATCAACACCAAGTTTC
CATGTTCCTTTTACAACAAAAGGGACTTGACTTTTTATATAACCAAATGTGGTGTTTTAG
TGACTTTTTGATAATGTACAGTTTTTTGTGAATTTAAATTTATTTCTTTCTATATTTTTA
GGACCAATCTCATTTTTAATAAGGTTTAAAAAAGGAAAAAAAAAGTCTAGAGAAAAAAAT
TCCTGTTTTTGCCATGTGATGTTCCACAAGTGCAGCTGTAGAAAAGTGCTTGTCAGTTGA
ATAAAAACCACATTTGATAGAGAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               821-1236, gnl|bosTau2|chr23 (13699591-13699172)
               

               
               821-1236, gnl|Hg17|chr12 (55276381-55275981)
               

               
               821-1236, gnl|Mm7|chr8 (114583827-114583454)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               821-1236, gnl|bosTau2|chr23 (13699591-13699172)
               

               
               821-1236, gnl|Hg17|chr12 (55276381-55275981)
               

               
               821-1236, gnl|Mm7|chr8 (114583827-114583454)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               cly (0.241284)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.241284)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)

	821-1236, gnl\|bosTau2\|chr23 (13699591-13699172)
	821-1236, gnl\|Hg17\|chr12 (55276381-55275981)
	821-1236, gnl\|Mm7\|chr8 (114583827-114583454)

	cly (0.241284)
	col (0.195008)
	fbs (0.175346)
	sin (0.174948)
	fhi (0.169578)
	pla (0.133672)
	eru (0.120048)
	ebs (0.118301)
	med (0.116252)
	ecc (0.115035)
	cbl (0.114797)
	jca (0.11396)