Ss1.1-reru18c_f21.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGATCGGGAAGCTGCGCAGCGAGCTGGAGATGGTGAACGGGAACGTCAGGGTGAGGGCGG AGATGCTGACGGAGCTGGTCCCCAACCAGGCAGAGCCTGCGGACCTGGAGCTGCTACAGG AGCTCAACCGGACATGCCGGGCCATGCAGCAGCGGGTCCTAGAGCTCATCCCGCGCATCG CCAACGAGCAGCTGACCGAGGAGCTGCTCATCGTCAACGACAATCTCAACAACGTGTTCC TGCGCCATGAACGGTTTGAACGGTTCCGCACAGGCCAGAGCACCAAGGCCCCAGGCGAGG CCGAGCCCGAGGCAGCAGCTGACCTGATCGACATGGGCCCCGACCCAGCGGCCAATGGCA GCCTCTCGTCCCAGCTGGCGGGAATGAACCTGGGCTCCAGCAGCGTGAGGGCTGGCCTGC AGTCTCTGGAGGCCTCTGGCCGACTGGAAGACGAGTTTGACATGTTCGCATTGACGCGGG GCAGCTCACTGGCAGACCAGCGCAAAGAGGTAAAATATGAAGCCCCCCAAGCAACAGACG GCCTGGCTGGAGCCCTGGATGCCCGGCAGCAGAGCACTGGCGCGATCCCTGTCACCCAGG CCTGCCTCATGGAGGACATCGAGCAGTGGCTGTCCACGGACGTGGGCAATGATGCCGAGG AGCCCAAGGGCGTCACCAGTGAAGAATTCGACAAGTTCCTGGAAGAACGGGCCAAAGTGG CCGACCGTTTGCCCAACCTCTCCAGCCCCTCGGCCGAGGGGCCCCCGGGTCCCCCATCTG GCACCGTCCCTCGAAAGAAGGCGCAGGAGAAGGACGAGGACATGCTGTTTGCCTTATGAG TGTGGGGCCTGGCGTCCTGGAGCCCGGGCCCCCGCTGTTCCCACACTGCGTGGCTGGGGC CTCTTCCTCCTTTGGTGTTCGCTGCTTTGGGGGTGGCTTGTTGCGCCCTCTTCTCTCCCC TTTGAGGTTGGGGCTGTGCTGCCTGGGGGTACAGGGGGCAGCTGGACAAGTTGAGAGCGC GAGTCAGTTCTATGCTGGATCCTGGCCACGCCTGCCTCCTTCCCCACCCCCACCAACCAC TACAACTTTGCTGGAAAGCTGGAGGCCCCGGCACAGACAGGCTGGCCTCGTGGTTGCCCC AGTGTGACTGCCCCTGCCGTGGTGACCCATCCCCAGAGGAGCGCCCTTCAGAGCCCTCAC TGCCAGTTAAGGCCCAGCCTGAGGTTGGAGACCGCAGATGCTTCTGTCGCAGCCTTGGGG CCCAAAGGCTTTGGCCACTGCGGAGGGCCGGGGGTGTGCTGTGGTGAAGGGAGGCCCCAC CAGCCCCCGGCCGCAGGGGGAGGCTGCAGGGGTGCCTGGCGCACCCATGTCACCCACGAC CCCCACGCCCTTCCCTCCATCCTTTCTCTCTTCCTCCCGCGCAGGCCTCCACTGGGCACT GGGCCCACCCAGCTGTTGGTTGACCCTCTTGTACTGGGAGAGGTGCCCTTTGTACCCCCG ATTAAAAGTAGAAAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGATCGGGAAGCTGCGCAGCGAGCTGGAGATGGTGAACGGGAACGTCAGGGTGAGGGCGG AGATGCTGACGGAGCTGGTCCCCAACCAGGCAGAGCCTGCGGACCTGGAGCTGCTACAGG AGCTCAACCGGACATGCCGGGCCATGCAGCAGCGGGTCCTAGAGCTCATCCCGCGCATCG CCAACGAGCAGCTGACCGAGGAGCTGCTCATCGTCAACGACAATCTCAACAACGTGTTCC TGCGCCATGAACGGTTTGAACGGTTCCGCACAGGCCAGAGCACCAAGGCCCCAGGCGAGG CCGAGCCCGAGGCAGCAGCTGACCTGATCGACATGGGCCCCGACCCAGCGGCCAATGGCA GCCTCTCGTCCCAGCTGGCGGGAATGAACCTGGGCTCCAGCAGCGTGAGGGCTGGCCTGC AGTCTCTGGAGGCCTCTGGCCGACTGGAAGACGAGTTTGACATGTTCGCATTGACGCGGG GCAGCTCACTGGCAGACCAGCGCAAAGAGGTAAAATATGAAGCCCCCCAAGCAACAGACG GCCTGGCTGGAGCCCTGGATGCCCGGCAGCAGAGCACTGGCGCGATCCCTGTCACCCAGG CCTGCCTCATGGAGGACATCGAGCAGTGGCTGTCCACGGACGTGGGCAATGATGCCGAGG AGCCCAAGGGCGTCACCAGTGAAGAATTCGACAAGTTCCTGGAAGAACGGGCCAAAGTGG CCGACCGTTTGCCCAACCTCTCCAGCCCCTCGGCCGAGGGGCCCCCGGGTCCCCCATCTG GCACCGTCCCTCGAAAGAAGGCGCAGGAGAAGGACGAGGACATGCTGTTTGCCTTATGAG TGTGGGGCCTGGCGTCCTGGAGCCCGGGCCCCCGCTGTTCCCACACTGCGTGGCTGGGGC CTCTTCCTCCTTTGGTGTTCGCTGCTTTGGGGGTGGCTTGTTGCGCCCTCTTCTCTCCCC TTTGAGGTTGGGGCTGTGCTGCCTGGGGGTACAGGGGGCAGCTGGACAAGTTGAGAGCGC GAGTCAGTTCTATGCTGGATCCTGGCCACGCCTGCCTCCTTCCCCACCCCCACCAACCAC TACAACTTTGCTGGAAAGCTGGAGGCCCCGGCACAGACAGGCTGGCCTCGTGGTTGCCCC AGTGTGACTGCCCCTGCCGTGGTGACCCATCCCCAGAGGAGCGCCCTTCAGAGCCCTCAC TGCCAGTTAAGGCCCAGCCTGAGGTTGGAGACCGCAGATGCTTCTGTCGCAGCCTTGGGG CCCAAAGGCTTTGGCCACTGCGGAGGGCCGGGGGTGTGCTGTGGTGAAGGGAGGCCCCAC CAGCCCCCGGCCGCAGGGGGAGGCTGCAGGGGTGCCTGGCGCACCCATGTCACCCACGAC CCCCACGCCCTTCCCTCCATCCTTTCTCTCTTCCTCCCGCGCAGGCCTCCACTGGGCACT GGGCCCACCCAGCTGTTGGTTGACCCTCTTGTACTGGGAGAGGTGCCCTTTGTACCCCCG ATTAAAAGTAGAAAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 117-308, gnl|bosTau2|chr5 (43635130-43634941) | |
| 117-308, gnl|canFam2|chr10 (31867069-31866913) | |
| 117-308, gnl|danRer3|chr12 (13136690-13136536) | |
| 117-308, gnl|dasNov1|scaffold_6280 (6227-6071) | |
| 117-308, gnl|echTel1|scaffold_306437 (14737-14580) | |
| 117-308, gnl|fr1|chrUn (293185054-293185210) | |
| 117-308, gnl|galGal2|chr1 (48840564-48840411) | |
| 117-308, gnl|hg17|chr22 (34050876-34051032) | |
| 117-308, gnl|Hg17|chr22 (34050891-34051077) | |
| 117-308, gnl|loxAfr1|scaffold_17230 (43609-43759) | |
| 117-308, gnl|mm7|chr8 (73599061-73599214) | |
| 117-308, gnl|Mm7|chr8 (73599073-73599251) | |
| 117-308, gnl|monDom2|scaffold_34 (2986024-2985858) | |
| 117-308, gnl|oryCun1|scaffold_173117 (38417-38261) | |
| 117-308, gnl|rheMac2|chr10 (79241580-79241736) | |
| 117-308, gnl|rn3|chr19 (13919338-13919491) | |
| 117-308, gnl|tetNig1|chr18 (4344051-4344204) | |
| 117-308, gnl|xenTro1|scaffold_246 (379921-379771) | |
| 388-528, gnl|bosTau2|chr5 (43631810-43631671) | |
| 388-528, gnl|Hg17|chr22 (34054875-34055015) | |
| 388-528, gnl|Mm7|chr8 (73602354-73602493) | |
| 683-1172, gnl|bosTau2|chr5 (46404707-46405201) | |
| 683-1172, gnl|Hg17|chr22 (34067600-34068098) | |
| 683-1172, gnl|Mm7|chr8 (73611169-73611626) | |
| 1309-1518, gnl|bosTau2|chr5 (46405419-46405635) | |
| 1309-1518, gnl|canFam2|chr10 (31854566-31853884) | |
| 1309-1518, gnl|echTel1|scaffold_306437 (6187-5655) | |
| 1309-1518, gnl|hg17|chr22 (34067828-34068521) | |
| 1309-1518, gnl|Hg17|chr22 (34068325-34068520) | |
| 1309-1518, gnl|mm7|chr8 (73611390-73612031) | |
| 1309-1518, gnl|Mm7|chr8 (73611831-73612030) | |
| 1309-1518, gnl|monDom2|scaffold_34 (2974365-2973532) | |
| 1309-1518, gnl|oryCun1|scaffold_198382 (131448-132043) | |
| 1309-1518, gnl|panTro1|chr23 (34225345-34226039) | |
| 1309-1518, gnl|rheMac2|chr10 (79257279-79257967) | |
| 1309-1518, gnl|rn3|chr19 (13929576-13930221) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 117-308, gnl|bosTau2|chr5 (43635130-43634941) | |
| 117-308, gnl|canFam2|chr10 (31867069-31866913) | |
| 117-308, gnl|danRer3|chr12 (13136690-13136536) | |
| 117-308, gnl|dasNov1|scaffold_6280 (6227-6071) | |
| 117-308, gnl|echTel1|scaffold_306437 (14737-14580) | |
| 117-308, gnl|fr1|chrUn (293185054-293185210) | |
| 117-308, gnl|galGal2|chr1 (48840564-48840411) | |
| 117-308, gnl|hg17|chr22 (34050876-34051032) | |
| 117-308, gnl|Hg17|chr22 (34050891-34051077) | |
| 117-308, gnl|loxAfr1|scaffold_17230 (43609-43759) | |
| 117-308, gnl|mm7|chr8 (73599061-73599214) | |
| 117-308, gnl|Mm7|chr8 (73599073-73599251) | |
| 117-308, gnl|monDom2|scaffold_34 (2986024-2985858) | |
| 117-308, gnl|oryCun1|scaffold_173117 (38417-38261) | |
| 117-308, gnl|rheMac2|chr10 (79241580-79241736) | |
| 117-308, gnl|rn3|chr19 (13919338-13919491) | |
| 117-308, gnl|tetNig1|chr18 (4344051-4344204) | |
| 117-308, gnl|xenTro1|scaffold_246 (379921-379771) | |
| 388-528, gnl|bosTau2|chr5 (43631810-43631671) | |
| 388-528, gnl|Hg17|chr22 (34054875-34055015) | |
| 388-528, gnl|Mm7|chr8 (73602354-73602493) | |
| 683-1172, gnl|bosTau2|chr5 (46404707-46405201) | |
| 683-1172, gnl|Hg17|chr22 (34067600-34068098) | |
| 683-1172, gnl|Mm7|chr8 (73611169-73611626) | |
| 1309-1518, gnl|bosTau2|chr5 (46405419-46405635) | |
| 1309-1518, gnl|canFam2|chr10 (31854566-31853884) | |
| 1309-1518, gnl|echTel1|scaffold_306437 (6187-5655) | |
| 1309-1518, gnl|hg17|chr22 (34067828-34068521) | |
| 1309-1518, gnl|Hg17|chr22 (34068325-34068520) | |
| 1309-1518, gnl|mm7|chr8 (73611390-73612031) | |
| 1309-1518, gnl|Mm7|chr8 (73611831-73612030) | |
| 1309-1518, gnl|monDom2|scaffold_34 (2974365-2973532) | |
| 1309-1518, gnl|oryCun1|scaffold_198382 (131448-132043) | |
| 1309-1518, gnl|panTro1|chr23 (34225345-34226039) | |
| 1309-1518, gnl|rheMac2|chr10 (79257279-79257967) | |
| 1309-1518, gnl|rn3|chr19 (13929576-13930221) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| nco (0.485201) | |
| pty (0.285429) | |
| ute (0.265569) | |
| ebs (0.236602) | |
| hyp (0.142837) | |
| eru (0.120048) | |
| clu (0.119646) | |
| jca (0.11396) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.485201) | |
| pty (0.285429) | |
| ute (0.265569) | |
| ebs (0.236602) | |
| hyp (0.142837) | |
| eru (0.120048) | |
| clu (0.119646) | |
| jca (0.11396) |