Ss1.1-reru18c_j7.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGCGGACGGACCGACTGACGGGAGGGACGGGAGGCGAGCAAGATGGCGCAGACTCAGGG CACCAAGAGGAAAGTCTGTTACTACTACGACGGGGATGTTGGAAATTACTATTATGGACA AGGCCACCCAATGAAGCCTCACCGAATCCGCATGACTCACAATTTGCTCCTTAACTATGG TCTCTACCGGAAAATGGAAATCTATCGCCCTCACAAGGCCAATGCTGAGGAGATGACCAA GTACCACAGTGATGACTACATTAAATTCCTGCGCTCCATCCGCCCAGATAACATGTCTGA GTACAGCAAGCAAATGCAGAGATTCAACGTTGGTGAGGACTGTCCGGTGTTTGATGGCCT GTTTGAGTTCTGTCAGCTGTCTGCTGGTGGCTCTGTGGCAAGTGCTGTGAAACTTAATAA GCAGCAGACGGACATCGCTGTGAACTGGGCTGGGGGCCTACACCATGCAAAGAAGTCCGA GGCATCTGGCTTCTGTTACGTCAATGATATCGTCTTGGCCATCCTGGAACTGCTAAAGTA TCACCAGAGGGTGCTGTATATTGACATTGATATTCACCACGGCGATGGCGTGGAAGAGGC CTTCTATACCACAGACCGAGTCATGACTGTGTCCTTTCATAAATATGGAGAGTACTTCCC AGGAACTGGGGACCTACGGGATATTGGGGCTGGCAAAGGCAAGTATTATGCTGTTAACTA CCCGCTCCGAGATGGGATTGATGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGCGGACGGACCGACTGACGGGAGGGACGGGAGGCGAGCAAGATGGCGCAGACTCAGGG CACCAAGAGGAAAGTCTGTTACTACTACGACGGGGATGTTGGAAATTACTATTATGGACA AGGCCACCCAATGAAGCCTCACCGAATCCGCATGACTCACAATTTGCTCCTTAACTATGG TCTCTACCGGAAAATGGAAATCTATCGCCCTCACAAGGCCAATGCTGAGGAGATGACCAA GTACCACAGTGATGACTACATTAAATTCCTGCGCTCCATCCGCCCAGATAACATGTCTGA GTACAGCAAGCAAATGCAGAGATTCAACGTTGGTGAGGACTGTCCGGTGTTTGATGGCCT GTTTGAGTTCTGTCAGCTGTCTGCTGGTGGCTCTGTGGCAAGTGCTGTGAAACTTAATAA GCAGCAGACGGACATCGCTGTGAACTGGGCTGGGGGCCTACACCATGCAAAGAAGTCCGA GGCATCTGGCTTCTGTTACGTCAATGATATCGTCTTGGCCATCCTGGAACTGCTAAAGTA TCACCAGAGGGTGCTGTATATTGACATTGATATTCACCACGGCGATGGCGTGGAAGAGGC CTTCTATACCACAGACCGAGTCATGACTGTGTCCTTTCATAAATATGGAGAGTACTTCCC AGGAACTGGGGACCTACGGGATATTGGGGCTGGCAAAGGCAAGTATTATGCTGTTAACTA CCCGCTCCGAGATGGGATTGATGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 100 entry(ies) | More info |
| Aligned organism(s): 100 entry(ies) | Help | Less info |
| 201-323, gnl|bosTau2|chr2 (73580652-73580774) | |
| 201-323, gnl|canFam2|chr2 (71808234-71808088) | |
| 201-323, gnl|canFam2|chr2 (71808210-71808093) | |
| 201-323, gnl|canFam2|chr2 (71808210-71808093) | |
| 201-323, gnl|danRer3|chr19 (62488578-62488721) | |
| 201-323, gnl|danRer3|chr19 (62488578-62488716) | |
| 201-323, gnl|danRer3|chr19 (62488570-62488716) | |
| 201-323, gnl|dasNov1|scaffold_4608 (137423-137541) | |
| 201-323, gnl|dasNov1|scaffold_4608 (137420-137537) | |
| 201-323, gnl|dasNov1|scaffold_4608 (137420-137537) | |
| 201-323, gnl|echTel1|scaffold_320671 (5192-5309) | |
| 201-323, gnl|echTel1|scaffold_320671 (5192-5309) | |
| 201-323, gnl|echTel1|scaffold_89073 (2275-2122) | |
| 201-323, gnl|fr1|chrUn (68546618-68546755) | |
| 201-323, gnl|fr1|chrUn (353525-353378) | |
| 201-323, gnl|fr1|chrUn (353555-353378) | |
| 201-323, gnl|galGal2|chr23 (4574241-4574103) | |
| 201-323, gnl|galGal2|chr23 (4574225-4574108) | |
| 201-323, gnl|hg17|chr1 (32451336-32451482) | |
| 201-323, gnl|Hg17|chr1 (32451354-32451476) | |
| 201-323, gnl|hg17|chr10 (95887645-95887762) | |
| 201-323, gnl|hg17|chr11 (113959348-113959465) | |
| 201-323, gnl|loxAfr1|scaffold_40383 (2747-2893) | |
| 201-323, gnl|loxAfr1|scaffold_40383 (2771-2888) | |
| 201-323, gnl|loxAfr1|scaffold_40383 (2771-2888) | |
| 201-323, gnl|mm7|chr17 (76787841-76787958) | |
| 201-323, gnl|mm7|chr17 (76787841-76787958) | |
| 201-323, gnl|mm7|chr4 (128973706-128973570) | |
| 201-323, gnl|Mm7|chr4 (128973694-128973574) | |
| 201-323, gnl|monDom2|scaffold_35 (24866312-24866195) | |
| 201-323, gnl|monDom2|scaffold_35 (24866312-24866195) | |
| 201-323, gnl|monDom2|scaffold_43 (7496249-7496103) | |
| 201-323, gnl|oryCun1|scaffold_118878 (8119-8017) | |
| 201-323, gnl|oryCun1|scaffold_118878 (8119-8017) | |
| 201-323, gnl|oryCun1|scaffold_211260 (26065-25920) | |
| 201-323, gnl|panTro1|chr1_random (60352324-60352178) | |
| 201-323, gnl|panTro1|chr8 (97643055-97643172) | |
| 201-323, gnl|panTro1|chr9 (115960438-115960555) | |
| 201-323, gnl|rheMac2|chr1 (35079396-35079542) | |
| 201-323, gnl|rheMac2|chr14 (113047649-113047766) | |
| 201-323, gnl|rheMac2|chr9 (93603651-93603768) | |
| 201-323, gnl|rn3|chr5 (148698002-148697857) | |
| 201-323, gnl|rn3|chr9 (78595378-78595261) | |
| 201-323, gnl|rn3|chr9 (78595378-78595261) | |
| 201-323, gnl|tetNig1|chr10 (3101005-3100870) | |
| 201-323, gnl|tetNig1|chr21 (4906525-4906672) | |
| 201-323, gnl|tetNig1|chr21 (4906513-4906672) | |
| 201-323, gnl|xenTro1|scaffold_523 (761990-762134) | |
| 201-323, gnl|xenTro1|scaffold_523 (762013-762129) | |
| 201-323, gnl|xenTro1|scaffold_523 (762015-762129) | |
| 538-680, gnl|bosTau2|chr2 (73587572-73587714) | |
| 538-680, gnl|canFam2|chr2 (71799297-71799127) | |
| 538-680, gnl|canFam2|chr2 (71799291-71799151) | |
| 538-680, gnl|canFam2|chr2 (71799291-71799148) | |
| 538-680, gnl|danRer3|chr19 (62490886-62491038) | |
| 538-680, gnl|danRer3|chr19 (62490896-62491032) | |
| 538-680, gnl|danRer3|chr19 (62490896-62491035) | |
| 538-680, gnl|dasNov1|scaffold_4608 (137750-137890) | |
| 538-680, gnl|dasNov1|scaffold_4608 (137750-137893) | |
| 538-680, gnl|dasNov1|scaffold_60746 (7581-7751) | |
| 538-680, gnl|echTel1|scaffold_299377 (4180-4349) | |
| 538-680, gnl|echTel1|scaffold_320671 (5553-5685) | |
| 538-680, gnl|echTel1|scaffold_320671 (5553-5688) | |
| 538-680, gnl|fr1|chrUn (68547190-68547364) | |
| 538-680, gnl|fr1|chrUn (352920-352755) | |
| 538-680, gnl|fr1|chrUn (352891-352752) | |
| 538-680, gnl|galGal2|chr23 (4570258-4570102) | |
| 538-680, gnl|galGal2|chr23 (4570252-4570109) | |
| 538-680, gnl|hg17|chr1 (32462225-32462395) | |
| 538-680, gnl|Hg17|chr1 (32462230-32462372) | |
| 538-680, gnl|hg17|chr10 (95887969-95888141) | |
| 538-680, gnl|hg17|chr11 (113959680-113959823) | |
| 538-680, gnl|loxAfr1|scaffold_40383 (8882-9052) | |
| 538-680, gnl|loxAfr1|scaffold_40383 (8888-9028) | |
| 538-680, gnl|loxAfr1|scaffold_40383 (8888-9031) | |
| 538-680, gnl|mm7|chr17 (76788173-76788313) | |
| 538-680, gnl|mm7|chr17 (76788173-76788316) | |
| 538-680, gnl|mm7|chr4 (128967158-128966988) | |
| 538-680, gnl|Mm7|chr4 (128967151-128967009) | |
| 538-680, gnl|monDom2|scaffold_35 (24865980-24865841) | |
| 538-680, gnl|monDom2|scaffold_35 (24865980-24865838) | |
| 538-680, gnl|monDom2|scaffold_43 (7490181-7490011) | |
| 538-680, gnl|oryCun1|scaffold_118878 (7952-7814) | |
| 538-680, gnl|oryCun1|scaffold_118878 (7952-7811) | |
| 538-680, gnl|oryCun1|scaffold_211260 (17471-17301) | |
| 538-680, gnl|panTro1|chr1_random (60341165-60340995) | |
| 538-680, gnl|panTro1|chr8 (97643379-97643551) | |
| 538-680, gnl|panTro1|chr9 (115960770-115960913) | |
| 538-680, gnl|rheMac2|chr1 (35092513-35092683) | |
| 538-680, gnl|rheMac2|chr14 (113047981-113048124) | |
| 538-680, gnl|rheMac2|chr9 (93603975-93604174) | |
| 538-680, gnl|rn3|chr5 (148688878-148688708) | |
| 538-680, gnl|rn3|chr9 (78595046-78594900) | |
| 538-680, gnl|rn3|chr9 (78595046-78594897) | |
| 538-680, gnl|tetNig1|chr10 (3100427-3100277) | |
| 538-680, gnl|tetNig1|chr21 (4907105-4907273) | |
| 538-680, gnl|tetNig1|chr21 (4907137-4907276) | |
| 538-680, gnl|xenTro1|scaffold_523 (764094-764249) | |
| 538-680, gnl|xenTro1|scaffold_523 (764049-764236) | |
| 538-680, gnl|xenTro1|scaffold_523 (764099-764242) |
| Aligned organism(s): 100 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 201-323, gnl|bosTau2|chr2 (73580652-73580774) | |
| 201-323, gnl|canFam2|chr2 (71808234-71808088) | |
| 201-323, gnl|canFam2|chr2 (71808210-71808093) | |
| 201-323, gnl|canFam2|chr2 (71808210-71808093) | |
| 201-323, gnl|danRer3|chr19 (62488578-62488721) | |
| 201-323, gnl|danRer3|chr19 (62488578-62488716) | |
| 201-323, gnl|danRer3|chr19 (62488570-62488716) | |
| 201-323, gnl|dasNov1|scaffold_4608 (137423-137541) | |
| 201-323, gnl|dasNov1|scaffold_4608 (137420-137537) | |
| 201-323, gnl|dasNov1|scaffold_4608 (137420-137537) | |
| 201-323, gnl|echTel1|scaffold_320671 (5192-5309) | |
| 201-323, gnl|echTel1|scaffold_320671 (5192-5309) | |
| 201-323, gnl|echTel1|scaffold_89073 (2275-2122) | |
| 201-323, gnl|fr1|chrUn (68546618-68546755) | |
| 201-323, gnl|fr1|chrUn (353525-353378) | |
| 201-323, gnl|fr1|chrUn (353555-353378) | |
| 201-323, gnl|galGal2|chr23 (4574241-4574103) | |
| 201-323, gnl|galGal2|chr23 (4574225-4574108) | |
| 201-323, gnl|hg17|chr1 (32451336-32451482) | |
| 201-323, gnl|Hg17|chr1 (32451354-32451476) | |
| 201-323, gnl|hg17|chr10 (95887645-95887762) | |
| 201-323, gnl|hg17|chr11 (113959348-113959465) | |
| 201-323, gnl|loxAfr1|scaffold_40383 (2747-2893) | |
| 201-323, gnl|loxAfr1|scaffold_40383 (2771-2888) | |
| 201-323, gnl|loxAfr1|scaffold_40383 (2771-2888) | |
| 201-323, gnl|mm7|chr17 (76787841-76787958) | |
| 201-323, gnl|mm7|chr17 (76787841-76787958) | |
| 201-323, gnl|mm7|chr4 (128973706-128973570) | |
| 201-323, gnl|Mm7|chr4 (128973694-128973574) | |
| 201-323, gnl|monDom2|scaffold_35 (24866312-24866195) | |
| 201-323, gnl|monDom2|scaffold_35 (24866312-24866195) | |
| 201-323, gnl|monDom2|scaffold_43 (7496249-7496103) | |
| 201-323, gnl|oryCun1|scaffold_118878 (8119-8017) | |
| 201-323, gnl|oryCun1|scaffold_118878 (8119-8017) | |
| 201-323, gnl|oryCun1|scaffold_211260 (26065-25920) | |
| 201-323, gnl|panTro1|chr1_random (60352324-60352178) | |
| 201-323, gnl|panTro1|chr8 (97643055-97643172) | |
| 201-323, gnl|panTro1|chr9 (115960438-115960555) | |
| 201-323, gnl|rheMac2|chr1 (35079396-35079542) | |
| 201-323, gnl|rheMac2|chr14 (113047649-113047766) | |
| 201-323, gnl|rheMac2|chr9 (93603651-93603768) | |
| 201-323, gnl|rn3|chr5 (148698002-148697857) | |
| 201-323, gnl|rn3|chr9 (78595378-78595261) | |
| 201-323, gnl|rn3|chr9 (78595378-78595261) | |
| 201-323, gnl|tetNig1|chr10 (3101005-3100870) | |
| 201-323, gnl|tetNig1|chr21 (4906525-4906672) | |
| 201-323, gnl|tetNig1|chr21 (4906513-4906672) | |
| 201-323, gnl|xenTro1|scaffold_523 (761990-762134) | |
| 201-323, gnl|xenTro1|scaffold_523 (762013-762129) | |
| 201-323, gnl|xenTro1|scaffold_523 (762015-762129) | |
| 538-680, gnl|bosTau2|chr2 (73587572-73587714) | |
| 538-680, gnl|canFam2|chr2 (71799297-71799127) | |
| 538-680, gnl|canFam2|chr2 (71799291-71799151) | |
| 538-680, gnl|canFam2|chr2 (71799291-71799148) | |
| 538-680, gnl|danRer3|chr19 (62490886-62491038) | |
| 538-680, gnl|danRer3|chr19 (62490896-62491032) | |
| 538-680, gnl|danRer3|chr19 (62490896-62491035) | |
| 538-680, gnl|dasNov1|scaffold_4608 (137750-137890) | |
| 538-680, gnl|dasNov1|scaffold_4608 (137750-137893) | |
| 538-680, gnl|dasNov1|scaffold_60746 (7581-7751) | |
| 538-680, gnl|echTel1|scaffold_299377 (4180-4349) | |
| 538-680, gnl|echTel1|scaffold_320671 (5553-5685) | |
| 538-680, gnl|echTel1|scaffold_320671 (5553-5688) | |
| 538-680, gnl|fr1|chrUn (68547190-68547364) | |
| 538-680, gnl|fr1|chrUn (352920-352755) | |
| 538-680, gnl|fr1|chrUn (352891-352752) | |
| 538-680, gnl|galGal2|chr23 (4570258-4570102) | |
| 538-680, gnl|galGal2|chr23 (4570252-4570109) | |
| 538-680, gnl|hg17|chr1 (32462225-32462395) | |
| 538-680, gnl|Hg17|chr1 (32462230-32462372) | |
| 538-680, gnl|hg17|chr10 (95887969-95888141) | |
| 538-680, gnl|hg17|chr11 (113959680-113959823) | |
| 538-680, gnl|loxAfr1|scaffold_40383 (8882-9052) | |
| 538-680, gnl|loxAfr1|scaffold_40383 (8888-9028) | |
| 538-680, gnl|loxAfr1|scaffold_40383 (8888-9031) | |
| 538-680, gnl|mm7|chr17 (76788173-76788313) | |
| 538-680, gnl|mm7|chr17 (76788173-76788316) | |
| 538-680, gnl|mm7|chr4 (128967158-128966988) | |
| 538-680, gnl|Mm7|chr4 (128967151-128967009) | |
| 538-680, gnl|monDom2|scaffold_35 (24865980-24865841) | |
| 538-680, gnl|monDom2|scaffold_35 (24865980-24865838) | |
| 538-680, gnl|monDom2|scaffold_43 (7490181-7490011) | |
| 538-680, gnl|oryCun1|scaffold_118878 (7952-7814) | |
| 538-680, gnl|oryCun1|scaffold_118878 (7952-7811) | |
| 538-680, gnl|oryCun1|scaffold_211260 (17471-17301) | |
| 538-680, gnl|panTro1|chr1_random (60341165-60340995) | |
| 538-680, gnl|panTro1|chr8 (97643379-97643551) | |
| 538-680, gnl|panTro1|chr9 (115960770-115960913) | |
| 538-680, gnl|rheMac2|chr1 (35092513-35092683) | |
| 538-680, gnl|rheMac2|chr14 (113047981-113048124) | |
| 538-680, gnl|rheMac2|chr9 (93603975-93604174) | |
| 538-680, gnl|rn3|chr5 (148688878-148688708) | |
| 538-680, gnl|rn3|chr9 (78595046-78594900) | |
| 538-680, gnl|rn3|chr9 (78595046-78594897) | |
| 538-680, gnl|tetNig1|chr10 (3100427-3100277) | |
| 538-680, gnl|tetNig1|chr21 (4907105-4907273) | |
| 538-680, gnl|tetNig1|chr21 (4907137-4907276) | |
| 538-680, gnl|xenTro1|scaffold_523 (764094-764249) | |
| 538-680, gnl|xenTro1|scaffold_523 (764049-764236) | |
| 538-680, gnl|xenTro1|scaffold_523 (764099-764242) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| med (0.232504) | |
| cty (0.20816) | |
| nep (0.183925) | |
| fty (0.17584) | |
| cly (0.120642) | |
| eru (0.120048) | |
| jej (0.0989218) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| med (0.232504) | |
| cty (0.20816) | |
| nep (0.183925) | |
| fty (0.17584) | |
| cly (0.120642) | |
| eru (0.120048) | |
| jej (0.0989218) |