Non-Coding RNA Search

Ss1.1-reru18c_l5.5

Sequence:


               
               GGATGAAACAATTACATGCTGATAGAGATTGATGCCTGCCAGATAATAAAGAGATAGGGA
AATTGATGCACTGCCAAATGATAAAGAGAAAGGGAAAGACAGATTGAGCTGAAATAGTAA
TAAAACAATTAGGCCGTTAAGTATAGAGATAAATAGTTGCACATATATTTGAAAATGGCT
GGCAGACAGTGGCCGCAGAAAGTTACTCTATACATAACAATTAATTAATGTTAATACTTC
TCTTGGGTAATTATTTTAAAGTACCTTATTATTTAATACCCCATCAATAAATAATTTCCA
ACAAAAGACTTTATTTCTTAAATGGATGAACTGCACATAACCAGAAAGTTCACTTTCAAA
ATAGTGTCAGAACTGAAAATGGAATGTAGTATAATAGCTATTTTGACATTTAATTGAATG
GTTAACAGGTATCTGAATTTTTATGGAATGGAAATTTTCTAATAGAAAAGTGGAATTAAT
CAGTTTAAGTAGGAGAAATGAAAGAAAGATGGCAATCTTAACCTAGTAAAGTTTTTAATG
AGCAAGTGTTGAAAGACTGTAGCCTGCTACCTGTTTATACATCTAATGAGCTAAGAATGG
TTTTTGCATTTTCTAAATGATTCAGAGTATCAAAAGAAGAATAGTATTTTGTGACATGAA
AATATATGAAATTTTATTGTTCATAATAAGGTTTTACTGAGACACAGCCATGCTTATTTA
CATATTTGGCTGCTTTTCTGCCACAGTGGCAGAATTAAGTAGTCTGAAATTCTGTGGCCT
GTGATGCCAAACATATTTACTGCTGTCTGGCTTTTACATATTGTGTGTCAGTCTTTATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATGAAACAATTACATGCTGATAGAGATTGATGCCTGCCAGATAATAAAGAGATAGGGA
AATTGATGCACTGCCAAATGATAAAGAGAAAGGGAAAGACAGATTGAGCTGAAATAGTAA
TAAAACAATTAGGCCGTTAAGTATAGAGATAAATAGTTGCACATATATTTGAAAATGGCT
GGCAGACAGTGGCCGCAGAAAGTTACTCTATACATAACAATTAATTAATGTTAATACTTC
TCTTGGGTAATTATTTTAAAGTACCTTATTATTTAATACCCCATCAATAAATAATTTCCA
ACAAAAGACTTTATTTCTTAAATGGATGAACTGCACATAACCAGAAAGTTCACTTTCAAA
ATAGTGTCAGAACTGAAAATGGAATGTAGTATAATAGCTATTTTGACATTTAATTGAATG
GTTAACAGGTATCTGAATTTTTATGGAATGGAAATTTTCTAATAGAAAAGTGGAATTAAT
CAGTTTAAGTAGGAGAAATGAAAGAAAGATGGCAATCTTAACCTAGTAAAGTTTTTAATG
AGCAAGTGTTGAAAGACTGTAGCCTGCTACCTGTTTATACATCTAATGAGCTAAGAATGG
TTTTTGCATTTTCTAAATGATTCAGAGTATCAAAAGAAGAATAGTATTTTGTGACATGAA
AATATATGAAATTTTATTGTTCATAATAAGGTTTTACTGAGACACAGCCATGCTTATTTA
CATATTTGGCTGCTTTTCTGCCACAGTGGCAGAATTAAGTAGTCTGAAATTCTGTGGCCT
GTGATGCCAAACATATTTACTGCTGTCTGGCTTTTACATATTGTGTGTCAGTCTTTATCA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               59-800, gnl|bosTau2|chr2 (9217609-9218323)
               

               
               59-800, gnl|Hg17|chr2 (152162374-152163157)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               59-800, gnl|bosTau2|chr2 (9217609-9218323)
               

               
               59-800, gnl|Hg17|chr2 (152162374-152163157)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               liv (0.146284)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               eru (0.120048)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               liv (0.146284)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               eru (0.120048)

	59-800, gnl\|bosTau2\|chr2 (9217609-9218323)
	59-800, gnl\|Hg17\|chr2 (152162374-152163157)

	fcc (0.197785)
	fty (0.17584)
	liv (0.146284)
	pla (0.133672)
	bla (0.124347)
	eru (0.120048)