Non-Coding RNA Search

Ss1.1-reru19c_c11.5

Sequence:


               
               TTGTTTTTGTTTTTTATTTTTAAATCTAGTTTTTAATAAGTCTGGGTGAGCGCACCTAAA
ATGGTAAGCAGTACCCTCCAGCTTTTTCTTAGTGCCTCTGTGCATTTGGGTGATGTTCTA
TTTACATGGCCTGTATAAATCTCCATTGGGAAATCATGCCTTCTAAAAATATTCTTATAT
GGAGGAGTGGGCAAAACAATGCTAATTATTTCTAAATGCTTTGTAGCAAAGCCTATCAAT
TGCAGTGAAGGGAATATCAGAGCCTTTGTAGTTGGGGATTTGAAAAGTGGAATTAATTGC
AATAGGGATAAAGTAGAAGAAACCACAAATTATCTTGTGCCTGAAATCCATTAAGAAGCC
TGGTAGCTTTAAGAACGAGCAGGGTGGGTTGTCTGTGGAAGTGTTCAATGGAATGGGTTT
TGTCTTCCAAAGGTGGGGAAATAGAGTAATGTTGAATAAAATCGCTTACAAAACTCAGAT
TAGACTCTCACGATGCATTGTTAAGTATGTAAAAGCAATAATATATTAATTCTCCATTGT
ACTTTTTATGTAACTACTGTGAGAGTTGAGCTCATTTTCTAATGGAAGAATGTTGAACAG
TTTTTGTGTTGATAGTTTACCTAATGCCCTTGTCTAATTAGATTATGATAAATAGGTTTT
TTGTTTTACAAGTTACGTGCTTTAAATTTTTATAAATGAACTTGTCCTTTAAACTTGTGG
TCGCCACATTGTTTAGTCAGTTTCCTCTGTAACAGGATCTTACGTTGTTTTATTTTTTTC
TGCATCTAAATTGCATGATTTCCAAACCCTGTACCATCTGAATTTTGCATTTTAGCACTT
GCACTATTACTCAGCAGCAGTAACATGGTAACACTTAAATGGTATTCGGGGACCTCCAAA
GACTAAACTGACACGCCTTCAAGGAGCCCAGGGGTAAGTTAACTTTGTCAATGGCATGGT
TTTAATCCTTTATTTACACTTGTATAAATCTAGTTAACAGTCTTGGAAGGCTTTCAGTGT
TGAGTAGCCTTCTATTAACATGTTTATGGTACTACATGGCTATGGGTATTTAATCCCCCT
CCCCCCCCCAAAAAAAAATTGAAGTTTAGAAGTAAACTATTTGGCAAAGATTTGTTTTTA
AAGTCTACTTGGTCATCTAAATGCATTCATTCTAAAAAAAATTTTTTGAACCAGTTGAAT
AAAAATTTTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGTTTTTGTTTTTTATTTTTAAATCTAGTTTTTAATAAGTCTGGGTGAGCGCACCTAAA
ATGGTAAGCAGTACCCTCCAGCTTTTTCTTAGTGCCTCTGTGCATTTGGGTGATGTTCTA
TTTACATGGCCTGTATAAATCTCCATTGGGAAATCATGCCTTCTAAAAATATTCTTATAT
GGAGGAGTGGGCAAAACAATGCTAATTATTTCTAAATGCTTTGTAGCAAAGCCTATCAAT
TGCAGTGAAGGGAATATCAGAGCCTTTGTAGTTGGGGATTTGAAAAGTGGAATTAATTGC
AATAGGGATAAAGTAGAAGAAACCACAAATTATCTTGTGCCTGAAATCCATTAAGAAGCC
TGGTAGCTTTAAGAACGAGCAGGGTGGGTTGTCTGTGGAAGTGTTCAATGGAATGGGTTT
TGTCTTCCAAAGGTGGGGAAATAGAGTAATGTTGAATAAAATCGCTTACAAAACTCAGAT
TAGACTCTCACGATGCATTGTTAAGTATGTAAAAGCAATAATATATTAATTCTCCATTGT
ACTTTTTATGTAACTACTGTGAGAGTTGAGCTCATTTTCTAATGGAAGAATGTTGAACAG
TTTTTGTGTTGATAGTTTACCTAATGCCCTTGTCTAATTAGATTATGATAAATAGGTTTT
TTGTTTTACAAGTTACGTGCTTTAAATTTTTATAAATGAACTTGTCCTTTAAACTTGTGG
TCGCCACATTGTTTAGTCAGTTTCCTCTGTAACAGGATCTTACGTTGTTTTATTTTTTTC
TGCATCTAAATTGCATGATTTCCAAACCCTGTACCATCTGAATTTTGCATTTTAGCACTT
GCACTATTACTCAGCAGCAGTAACATGGTAACACTTAAATGGTATTCGGGGACCTCCAAA
GACTAAACTGACACGCCTTCAAGGAGCCCAGGGGTAAGTTAACTTTGTCAATGGCATGGT
TTTAATCCTTTATTTACACTTGTATAAATCTAGTTAACAGTCTTGGAAGGCTTTCAGTGT
TGAGTAGCCTTCTATTAACATGTTTATGGTACTACATGGCTATGGGTATTTAATCCCCCT
CCCCCCCCCAAAAAAAAATTGAAGTTTAGAAGTAAACTATTTGGCAAAGATTTGTTTTTA
AAGTCTACTTGGTCATCTAAATGCATTCATTCTAAAAAAAATTTTTTGAACCAGTTGAAT
AAAAATTTTTGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|12044290|gb|AAG47782.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12044290|gb|AAG47782.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               436-1212, gnl|bosTau2|chr10 (41285228-41284468)
               

               
               436-1212, gnl|Hg17|chr1 (11019054-11019805)
               

               
               436-1212, gnl|Mm7|chr4 (147605747-147605019)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               436-1212, gnl|bosTau2|chr10 (41285228-41284468)
               

               
               436-1212, gnl|Hg17|chr1 (11019054-11019805)
               

               
               436-1212, gnl|Mm7|chr4 (147605747-147605019)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               liv (0.292569)
               

               
               lin (0.291206)
               

               
               nms (0.213858)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               nje (0.16592)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               nms (0.213858)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               nje (0.16592)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	436-1212, gnl\|bosTau2\|chr10 (41285228-41284468)
	436-1212, gnl\|Hg17\|chr1 (11019054-11019805)
	436-1212, gnl\|Mm7\|chr4 (147605747-147605019)

	liv (0.292569)
	lin (0.291206)
	nms (0.213858)
	aor (0.195274)
	nep (0.183925)
	nje (0.16592)
	spl (0.143184)
	lnt (0.142308)
	csk (0.140746)
	che (0.136314)
	pla (0.133672)
	kid (0.129735)
	sug (0.127291)
	tra (0.123092)
	eru (0.120048)
	spc (0.113366)
	cty (0.10408)