Non-Coding RNA Search

Ss1.1-reru19c_h21.5

Sequence:


               
               AGAACCAAAAGCTTTTGCTAGAAGGTCAGCTTTTACGAGAGAAAACACATGGCCTTGTAG
TTGAGAACCAGGAGTTAAGACAGCGCTTGGGGATGGATGCCTTAGTTACTGAAGAGGAGG
CAGAGACCAAGGTAAGTCATGTCCTTTATTAGGTGCCATATATGAGAACTGGTTTTAATT
GATGTGTCCTCTTTCTTTAATGGTAATTCATTTTTCAAGAGTGTAGTGAATAGTCCTAAG
TCCTAATAATTAAAATAAATTACATGGCTGTCTAAGAGCAAGTACTTACAAATGCTGATC
ACCAACAAGGTGTACCTACCGTGCCAGCCTTCAGAAGAACCAGGGTAAGAGAGCCAGTCA
GATTTGACTTTGAATGCTGTCAAAATTATAGTAGTTCTTTGATGAATATGAATGAGAGAG
AAAGAATTCCTTGTGATAGTGACACCTTTCTGATAGAGGGGTGATGTATGGATTTTAGTC
TGTGAATCATGGCAGATGTAGTGATAACATGTAAGATGGTCTGAGGCTGACAGTAGGCCA
GTTCTATTCTGTGAAGTTGATGTTTGACACAAAATTGTTTAAAAATTACTATCCAAAAAG
GTTCTGGGCCTAATTTCACTATAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAACCAAAAGCTTTTGCTAGAAGGTCAGCTTTTACGAGAGAAAACACATGGCCTTGTAG
TTGAGAACCAGGAGTTAAGACAGCGCTTGGGGATGGATGCCTTAGTTACTGAAGAGGAGG
CAGAGACCAAGGTAAGTCATGTCCTTTATTAGGTGCCATATATGAGAACTGGTTTTAATT
GATGTGTCCTCTTTCTTTAATGGTAATTCATTTTTCAAGAGTGTAGTGAATAGTCCTAAG
TCCTAATAATTAAAATAAATTACATGGCTGTCTAAGAGCAAGTACTTACAAATGCTGATC
ACCAACAAGGTGTACCTACCGTGCCAGCCTTCAGAAGAACCAGGGTAAGAGAGCCAGTCA
GATTTGACTTTGAATGCTGTCAAAATTATAGTAGTTCTTTGATGAATATGAATGAGAGAG
AAAGAATTCCTTGTGATAGTGACACCTTTCTGATAGAGGGGTGATGTATGGATTTTAGTC
TGTGAATCATGGCAGATGTAGTGATAACATGTAAGATGGTCTGAGGCTGACAGTAGGCCA
GTTCTATTCTGTGAAGTTGATGTTTGACACAAAATTGTTTAAAAATTACTATCCAAAAAG
GTTCTGGGCCTAATTTCACTATAG

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-589, gnl|bosTau2|chr17 (41357284-41356718)
               

               
               1-589, gnl|Hg17|chr22 (27517749-27517073)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-589, gnl|bosTau2|chr17 (41357284-41356718)
               

               
               1-589, gnl|Hg17|chr22 (27517749-27517073)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eru (0.120048)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eru (0.120048)

	1-589, gnl\|bosTau2\|chr17 (41357284-41356718)
	1-589, gnl\|Hg17\|chr22 (27517749-27517073)

	lin (0.145603)
	lyg (0.133103)
	ova (0.129132)
	sug (0.127291)
	tra (0.123092)
	eru (0.120048)